View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11462_high_2 (Length: 447)
Name: NF11462_high_2
Description: NF11462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11462_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 14740353 - 14739936
Alignment:
| Q |
20 |
gtacagttacaatcaatgctccgaatatttcgtccttaacttgcacaagcactccgacactaaaatttgtcgtggttagtccgatctccatagttgatgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740353 |
gtacagttacaatcaatgctccgaatatttcgtccttaacttgcacaagcactccgacactaaaatttgtcgtggttagtccgatctccatagttgatgc |
14740254 |
T |
|
| Q |
120 |
aaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctgagtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740253 |
aaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctgagtgtctatttgagctattgagtgcacttaaaggtgtcaagtctctcact |
14740154 |
T |
|
| Q |
220 |
atgacaagtgatacttttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaatgatgcctattgacattgtgccttta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740153 |
atgacaagtgatacttttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaatgatgcctattgacattgtgccttta |
14740054 |
T |
|
| Q |
320 |
tttttatgcnnnnnnnaatcattgcttatttctgtgtatcacacaacaactgatattggtttgcttcctccacaagtctctttacttttcagcggatact |
419 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740053 |
tttttatgctttttttaatcattgcttatttctgtgtatcacaaaacaactgatattggtttgcttcctccacaagtctctttacttttcagcggatact |
14739954 |
T |
|
| Q |
420 |
ctccatctccttcctttg |
437 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14739953 |
ctccatctccttcctttg |
14739936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 35 - 437
Target Start/End: Original strand, 17585865 - 17586276
Alignment:
| Q |
35 |
atgctccgaatatttcgtccttaacttgcacaagcactccgacactaaaatttgtcgtggttagtccgatctccatagttgatgcaaatattggtcttga |
134 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
17585865 |
atgctccgaatatttcgtccttatcttgctcaagcactccgacactaaaatttgtcctggttaatctgatctccattgttgatgcaaatattggtcttga |
17585964 |
T |
|
| Q |
135 |
gtttgactatccacaaagtgaacaatatcgtgctgagtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatact |
234 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17585965 |
gtttgactatccacaaagcgaacaatatgctgctcagtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatact |
17586064 |
T |
|
| Q |
235 |
tttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaatgatgcctattgacattg-tgcctttatttttatg----cn |
329 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||| |||| || |
|
|
| T |
17586065 |
tttcaggtatctttgtttgttttctcgtcattttt-attttctttagtatatttacaagtgatgcctattgacattgttgccttttgttttgtgtttttt |
17586163 |
T |
|
| Q |
330 |
nnnnnnaatcattgctta--tttctgtgtatcacacaacaa---ctgatattggtttgcttcctccacaagtctctttacttttcagcggatactctcca |
424 |
Q |
| |
|
|||| ||||||| ||||| ||||| |||||| || ||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
17586164 |
ttaattaatcgttgcttatttttctatgtatgacacaataatcgtcgatcttggtttgcttcctccattagtctctttacttttcggcggatactctcca |
17586263 |
T |
|
| Q |
425 |
tctccttcctttg |
437 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17586264 |
tctccttcctttg |
17586276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University