View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11462_high_3 (Length: 430)
Name: NF11462_high_3
Description: NF11462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11462_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 160 - 416
Target Start/End: Complemental strand, 29248307 - 29248051
Alignment:
| Q |
160 |
acagctggttctgcatcagtcggagcctgggttacagctggttctgcatcagccagaacctcttcatcgccaggattcacatcagtattaactttcattg |
259 |
Q |
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| T |
29248307 |
acagcttgttctgcaacatccagaccctggattacagctggttctgcatcagccggaatctcttcatcgccaggattcacatcagtattaactttcattg |
29248208 |
T |
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| Q |
260 |
attcataataattcagataggtttttgtcactttaagtttgaggaaagaaagttggaacatattccagcaattcttcaatagcttcttctcaaagctctt |
359 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
29248207 |
attcataataattcagataggtttctgtcactttaagtttgaggaaagaaagttggaacacattccagcaattcttcaacagcttcttctcaaagctctt |
29248108 |
T |
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| Q |
360 |
agcacattcaaaagtgaaattaccggaggttaatcggttcaaagctaagtagttcat |
416 |
Q |
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| T |
29248107 |
aacacattcaaaagtgaaattaccgcgggataatcggttcaaagctaagtagttcat |
29248051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 29248307 - 29248251
Alignment:
| Q |
127 |
acagcttgttctgcaacatccagaccctggattacagctggttctgcatcagtcgga |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29248307 |
acagcttgttctgcaacatccagaccctggattacagctggttctgcatcagccgga |
29248251 |
T |
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