View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11462_high_8 (Length: 332)

Name: NF11462_high_8
Description: NF11462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11462_high_8
NF11462_high_8
[»] chr1 (2 HSPs)
chr1 (36-314)||(14397102-14397380)
chr1 (78-131)||(23223167-23223220)
[»] scaffold1026 (1 HSPs)
scaffold1026 (82-134)||(2265-2317)
[»] chr7 (2 HSPs)
chr7 (60-134)||(21471423-21471497)
chr7 (150-199)||(1073998-1074046)
[»] chr3 (1 HSPs)
chr3 (72-134)||(11520766-11520828)
[»] chr8 (1 HSPs)
chr8 (78-134)||(16052710-16052766)
[»] chr5 (2 HSPs)
chr5 (85-134)||(22754582-22754631)
chr5 (78-135)||(23125373-23125430)
[»] chr2 (2 HSPs)
chr2 (60-133)||(39730118-39730190)
chr2 (69-134)||(22389176-22389240)
[»] chr6 (1 HSPs)
chr6 (78-134)||(12972816-12972872)
[»] scaffold0043 (1 HSPs)
scaffold0043 (150-197)||(58447-58494)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 14397380 - 14397102
Alignment:
Q  36 gtgacttatcatcactcaatttcttaaagccaatgagactgatcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattgaaa 135  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| |||||||||||| ||||    
T  14397380 gtgacttatcatcactcaacttcttaaagccaatgagactggtcaaggtatttgccacactaccgtcgtcatgtgattgtaccttgctatgagatcgaaa 14397281  T
Q  136 ggcaaatatttccccacacacatatagatgtcttttgaagcttataatgtggcttaggttaaggatttcctatttgaaaaactatcttccaacttgtagc 235  Q
    | |||||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  14397280 gacaaatatttccatacacacatatagatgtcttttcaagtttataatgtggcttaggttaaggatttcctatttaaaaaactatcttccaacttgtaac 14397181  T
Q  236 tttgattcaaaatctctctcaaccaatgtttatgaggtattaatttttattcaagaagaaaatgggtaccggtagaact 314  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14397180 tttgattcaaaatctgtcacaaccaatgtttatgaggtattaatttttattcaagaagaaaatgggtaccggtagaact 14397102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 23223220 - 23223167
Alignment:
Q  78 tcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagatt 131  Q
    |||||| ||||||||||||  | ||||||||||||||||| |||||||||||||    
T  23223220 tcaaggcatttgccacactccaatcgtcatgtgattgtaccttgctatgagatt 23223167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 2265 - 2317
Alignment:
Q  82 ggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattgaa 134  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  2265 ggtatttgccacactcaagtcgtcatgtgattgtactttgctatgaaattgaa 2317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 21471497 - 21471423
Alignment:
Q  60 taaagccaatgagactgatcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattgaa 134  Q
    |||| |||||| | ||| |||||| |||||||| |||  ||||||||||||||||||| ||||||||||||||||    
T  21471497 taaatccaatggggctggtcaaggcatttgccatactccagtcgtcatgtgattgtaccttgctatgagattgaa 21471423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 1074046 - 1073998
Alignment:
Q  150 cacacacatatagatgtcttttgaagcttataatgtggcttaggttaagg 199  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  1074046 cacacacatatagaggtcttttcaag-ttataatgtggcttaggataagg 1073998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11520828 - 11520766
Alignment:
Q  72 gactgatcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattgaa 134  Q
    ||||| |||||| ||||||||||||  ||||||||| ||||||||| ||||||||||||||||    
T  11520828 gactggtcaaggcatttgccacactctagtcgtcatatgattgtaccttgctatgagattgaa 11520766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 16052710 - 16052766
Alignment:
Q  78 tcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattgaa 134  Q
    |||||| ||||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  16052710 tcaaggcatttgccacacttcaatcgtcatgtgattgtaccttgctatgagattgaa 16052766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 22754631 - 22754582
Alignment:
Q  85 atttgccacactagagtcgtcatgtgattgtactttgctatgagattgaa 134  Q
    ||||||||||||  ||||||||||||||||||| ||||||| ||||||||    
T  22754631 atttgccacactccagtcgtcatgtgattgtaccttgctataagattgaa 22754582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 23125373 - 23125430
Alignment:
Q  78 tcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattgaaa 135  Q
    |||||| | ||||||||||  ||| ||||||||||||||||||||| |||||||||||    
T  23125373 tcaaggaacttgccacactccagttgtcatgtgattgtactttgctgtgagattgaaa 23125430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 39730190 - 39730118
Alignment:
Q  60 taaagccaatgagactgatcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattga 133  Q
    |||||||| |||| ||| |||||||||||||||||||  |||| || ||||||||||| || ||||||||||||    
T  39730190 taaagccagtgag-ctggtcaaggtatttgccacactcaagtcatcgtgtgattgtacattactatgagattga 39730118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 22389176 - 22389240
Alignment:
Q  69 tgagactgatcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattgaa 134  Q
    |||| ||| ||||||||||||||||||   ||||||||||||| ||||| ||||||||| ||||||    
T  22389176 tgaggctggtcaaggtatttgccacaccc-agtcgtcatgtgactgtaccttgctatgaaattgaa 22389240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 12972816 - 12972872
Alignment:
Q  78 tcaaggtatttgccacactagagtcgtcatgtgattgtactttgctatgagattgaa 134  Q
    |||||| ||||||||||||  | || |||||||||||||| ||||||||||||||||    
T  12972816 tcaaggcatttgccacactccaatcatcatgtgattgtaccttgctatgagattgaa 12972872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 58494 - 58447
Alignment:
Q  150 cacacacatatagatgtcttttgaagcttataatgtggcttaggttaa 197  Q
    |||||||||||| ||||||||| ||  |||||||||||||||||||||    
T  58494 cacacacatatatatgtcttttcaaagttataatgtggcttaggttaa 58447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University