View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11462_high_9 (Length: 320)

Name: NF11462_high_9
Description: NF11462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11462_high_9
NF11462_high_9
[»] chr5 (2 HSPs)
chr5 (28-199)||(41592584-41592755)
chr5 (93-178)||(35415960-35416045)
[»] chr2 (3 HSPs)
chr2 (19-242)||(11652651-11652874)
chr2 (93-153)||(42183791-42183851)
chr2 (91-145)||(10206915-10206969)
[»] chr8 (6 HSPs)
chr8 (77-261)||(18016434-18016617)
chr8 (94-196)||(33182909-33183011)
chr8 (93-150)||(20877492-20877549)
chr8 (93-141)||(41091451-41091499)
chr8 (117-199)||(13368357-13368439)
chr8 (96-149)||(8304904-8304957)
[»] chr1 (6 HSPs)
chr1 (77-304)||(1797874-1798101)
chr1 (19-199)||(3394786-3394966)
chr1 (86-153)||(6135301-6135368)
chr1 (94-151)||(22157813-22157870)
chr1 (94-127)||(52401799-52401832)
chr1 (87-145)||(12503268-12503326)
[»] chr7 (4 HSPs)
chr7 (23-199)||(29802444-29802620)
chr7 (52-242)||(34328274-34328464)
chr7 (79-151)||(26650186-26650258)
chr7 (93-150)||(8752201-8752258)
[»] chr6 (4 HSPs)
chr6 (90-218)||(11466804-11466932)
chr6 (96-159)||(5195289-5195352)
chr6 (86-140)||(34777994-34778048)
chr6 (94-130)||(20565145-20565181)
[»] chr4 (5 HSPs)
chr4 (96-170)||(48782777-48782851)
chr4 (41-170)||(21141606-21141735)
chr4 (90-127)||(32933804-32933841)
chr4 (77-140)||(20370198-20370261)
chr4 (99-140)||(26125309-26125350)
[»] chr3 (3 HSPs)
chr3 (78-224)||(55498017-55498163)
chr3 (94-151)||(15206041-15206098)
chr3 (94-151)||(15245107-15245164)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 41592584 - 41592755
Alignment:
Q  28 gtgatcattttgctcagtttatttatttggcgggtacgccacaatttttacattcattcctaaaagtaatttggcttgcttgtgtttgggtaatttgaaa 127  Q
    |||||||||||||| |||||||| ||||| |||| | ||| | || || |||||||| | | || ||||||||| |||||||||| || |||||||| ||    
T  41592584 gtgatcattttgcttagtttattcatttgacgggcatgccgcgatcttcacattcatccttcaaggtaatttgggttgcttgtgtatgagtaatttggaa 41592683  T
Q  128 ggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccctccttgataaagttaagctgaa 199  Q
     ||||  ||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||    
T  41592684 agaaagaaacaaccgtgtcttcaaaaatgtggcttccgatcattatgccctccttgataaagttaagctgaa 41592755  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 35415960 - 35416045
Alignment:
Q  93 gtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccct 178  Q
    |||||||||||||||||||| |||| ||||| ||| |||| ||||||||| |||||||||| || ||| |||||| ||||||||||    
T  35415960 gtaatttggcttgcttgtgtgtgggcaatttaaaaagaaaggaacaaccgcgtcttcaaaaatgtggcttccgattcttatgccct 35416045  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 11652651 - 11652874
Alignment:
Q  19 gtgtgattggtgatcattttgctcagtttatttatttggcgggtacgccacaatttttacattcattcctaaaagtaatttggcttgcttgtgtttgggt 118  Q
    ||||||||| ||| ||||||  |||||||| | ||||||| | || |||||||| || |||||| ||| | || |||||||||||||||||||| |||||    
T  11652651 gtgtgattgatgaacattttaatcagtttactcatttggcagatatgccacaatcttcacattctttcttcaaggtaatttggcttgcttgtgtgtgggt 11652750  T
Q  119 aatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccctccttgataaagttaagctgaagtctttactgtggttgaaa 218  Q
    |||||| || |||| |||  ||||||| || |||| |  ||| |||||||||| ||| ||| |||||||||||||||| || ||||| || |||||||||    
T  11652751 aatttggaaagaaaggaatgaccgtgttttaaaaaatatggcttccgatccttttgctctcattgataaagttaagcttaattcttttctttggttgaaa 11652850  T
Q  219 acaaataaggcttcattcgctttt 242  Q
     |||| || ||||  |||||||||    
T  11652851 tcaaagaatgctttgttcgctttt 11652874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 42183791 - 42183851
Alignment:
Q  93 gtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaa 153  Q
    ||||||||||||||||||| ||||||||| || ||||||| |||||| |||||||||||||    
T  42183791 gtaatttggcttgcttgtgcttgggtaatatggaaggaaaggaacaatcgtgtcttcaaaa 42183851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 10206969 - 10206915
Alignment:
Q  91 aagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgt 145  Q
    ||||||||||| |||||| |||||||||  |||| ||||||| ||||||||||||    
T  10206969 aagtaatttggtttgcttctgtttgggtgctttggaaggaaaggaacaaccgtgt 10206915  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 261
Target Start/End: Original strand, 18016434 - 18016617
Alignment:
Q  77 acattcattcctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgcc 176  Q
    |||||||||| ||||  | |||||||| ||||||||||||||||| || ||||||| ||||||| |||||||||||| || ||| ||||||||||| | |    
T  18016434 acattcattcataaagatcatttggctagcttgtgtttgggtaatctggaaggaaaggaacaactgtgtcttcaaaaatgtggcttccgatccttacgtc 18016533  T
Q  177 ctccttgataaagttaagctgaagtctttactgtggttgaaaacaaataaggcttcattcgctttttattatcatgaccggtggc 261  Q
    |||||||| ||||||||| |||| || || ||  || ||||||||||| ||| ||| ||| ||| || |||||||||| ||||||    
T  18016534 ctccttgacaaagttaagttgaattccttcct-aggctgaaaacaaatcaggtttcgttcacttattgttatcatgactggtggc 18016617  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 33182909 - 33183011
Alignment:
Q  94 taatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccctccttgataaagttaa 193  Q
    |||||||| |||||||||| ||||||||||| || |||||| ||||  ||||||| ||||  |  ||||| |||||||||||| ||||||||||||| ||    
T  33182909 taatttggtttgcttgtgtgtgggtaatttggaaagaaatggacaattgtgtctttaaaaaagtagcatctgatccttatgccttccttgataaagtcaa 33183008  T
Q  194 gct 196  Q
    |||    
T  33183009 gct 33183011  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 20877549 - 20877492
Alignment:
Q  93 gtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttca 150  Q
    ||||||||||||||||||||||||| |||||| ||||| |  |||||||| |||||||    
T  20877549 gtaatttggcttgcttgtgtttgggcaatttggaaggagagaaacaaccgagtcttca 20877492  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 41091451 - 41091499
Alignment:
Q  93 gtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaacc 141  Q
    ||||||||| |||||| ||||||||| ||||||||||||| ||||||||    
T  41091451 gtaatttggtttgcttctgtttgggtgatttgaaaggaaaggaacaacc 41091499  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 13368357 - 13368439
Alignment:
Q  117 gtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccctccttgataaagttaagctgaa 199  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||| ||| ||| | |   | ||||||| ||||||||||||||    
T  13368357 gtaatttggaaggaaaggaacaaccgtgtctttaaaagtgcggcttcccatcttcacatcatccttgaaaaagttaagctgaa 13368439  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 8304957 - 8304904
Alignment:
Q  96 atttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttc 149  Q
    |||||||||||||||||||||| ||| || ||||| |  |||||||||||||||    
T  8304957 atttggcttgcttgtgtttgggcaatatggaaggagagaaacaaccgtgtcttc 8304904  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 304
Target Start/End: Complemental strand, 1798101 - 1797874
Alignment:
Q  77 acattcattcctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgcc 176  Q
    |||||||||| | || |||||||||||||||||||| ||||||||||| || |||| |||  || |||| ||||| | || ||| ||| |||||| |||     
T  1798101 acattcattcttcaaggtaatttggcttgcttgtgtgtgggtaatttggaaagaaaggaatgactgtgttttcaacaatgtggcttccaatccttttgct 1798002  T
Q  177 ctccttgataaagttaagctgaagtctttactgtggttgaaaacaaataaggcttcattcgctttttattatcatgaccggtggcatcaccagcttcctt 276  Q
    ||| ||||||||||||||||||| || || || ||||||||| ||||||| ||||  ||| |||||   ||||||||  |||  | |||||  |||| ||    
T  1798001 ctcattgataaagttaagctgaattcgtttctatggttgaaatcaaataatgctttgttcacttttagctatcatgaatggtaacgtcacctacttcatt 1797902  T
Q  277 gtatgggtgtttttgtttaatttcttct 304  Q
    ||||||||||| || | |||||||||||    
T  1797901 gtatgggtgttattatgtaatttcttct 1797874  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 3394786 - 3394966
Alignment:
Q  19 gtgtgattggtgatcattttgctcagtttatttatttggcgggtacgccacaatttttacattcattcctaaaagtaatttggcttgcttgtgtttgggt 118  Q
    |||||||| | || ||||| ||||| |||| ||| |||||||||| ||||| || ||  ||||||||| | ||  |||||||||||||||  ||||||||    
T  3394786 gtgtgattagcgaacatttcgctcaatttacttagttggcgggtatgccacgatcttctcattcattcttcaagttaatttggcttgctttagtttgggt 3394885  T
Q  119 aatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccctccttgataaagttaagctgaa 199  Q
    ||||||||| ||||  || |||||  ||||||||| || ||  ||||||||   || |||| | |||||||| ||||||||    
T  3394886 aatttgaaaagaaagaaataaccgcatcttcaaaaatgtggtttccgatccaggtgacctcatcgataaagtgaagctgaa 3394966  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 6135368 - 6135301
Alignment:
Q  86 cctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaa 153  Q
    ||||||||| |||||||||||||  |||||| ||||||||||||| |  |||||| ||||||||||||    
T  6135368 cctaaaagttatttggcttgctttagtttggataatttgaaaggatagaaacaactgtgtcttcaaaa 6135301  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 22157870 - 22157813
Alignment:
Q  94 taatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaa 151  Q
    |||||||| |||| | ||||||||| ||||| ||||||| ||||||||||||||||||    
T  22157870 taatttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccgtgtcttcaa 22157813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 52401799 - 52401832
Alignment:
Q  94 taatttggcttgcttgtgtttgggtaatttgaaa 127  Q
    ||||||||||||||||||||||||||||||||||    
T  52401799 taatttggcttgcttgtgtttgggtaatttgaaa 52401832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 12503326 - 12503268
Alignment:
Q  87 ctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgt 145  Q
    |||||| |||| || ||||| ||||| ||||| |||||||||||||| |||||||||||    
T  12503326 ctaaaattaatctgacttgcatgtgtctgggttatttgaaaggaaataaacaaccgtgt 12503268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 29802444 - 29802620
Alignment:
Q  23 gattggtgatcattttgctcagtttatttatttggcgggtacgccacaatttttacattcattcctaaaagtaatttggcttgcttgtgtttgggtaatt 122  Q
    |||| ||||||||| ||| ||||||| | |  ||||||||| ||  | ||||| |||||| || ||||| ||||||||||||||||||  |||||||||     
T  29802444 gatttgtgatcattatgcacagtttactcacatggcgggtatgctgcgattttcacattcttttctaaaggtaatttggcttgcttgtacttgggtaata 29802543  T
Q  123 tgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccctccttgataaagttaagctgaa 199  Q
    || ||||||| |||||||||||||||  ||| | || || ||||||||||| | ||| |||||||||||||| ||||    
T  29802544 tggaaggaaaggaacaaccgtgtcttacaaaatacgacaaccgatccttatactctcattgataaagttaagttgaa 29802620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 242
Target Start/End: Complemental strand, 34328464 - 34328274
Alignment:
Q  52 atttggcgggtacgccacaatttttacattcattcctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaa 151  Q
    |||||||||||| |||   || || |||||||||| | || ||||||||  ||  |||||  |||||||||||||| |||| ||||||||| |||||| |    
T  34328464 atttggcgggtatgccgtgatcttcacattcattcttcaaggtaatttgttttttttgtgcgtgggtaatttgaaaagaaaggaacaaccgcgtcttcta 34328365  T
Q  152 aactgcggcatccgatccttatgccctccttgataaagttaagctgaagtctttactgtggttgaaaacaaataaggcttcattcgctttt 242  Q
    ||    ||  ||| |||||||||||||||||||||||||||||||||| ||  | || ||||||||| ||||||| ||||  |||||||||    
T  34328364 aaaaaaggtttccaatccttatgccctccttgataaagttaagctgaattcgcttctctggttgaaatcaaataatgctttgttcgctttt 34328274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 26650258 - 26650186
Alignment:
Q  79 attcattcctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaa 151  Q
    |||| ||||| ||| |||| |||||||||||||| ||||| ||||  ||||||| |||||||||||| |||||    
T  26650258 attctttcctcaaattaatctggcttgcttgtgtctgggttatttagaaggaaaggaacaaccgtgttttcaa 26650186  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 8752201 - 8752258
Alignment:
Q  93 gtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttca 150  Q
    ||||||||||||||||||||||||| |||||| || || |  |||||||| |||||||    
T  8752201 gtaatttggcttgcttgtgtttgggcaatttggaaagagagaaacaaccgagtcttca 8752258  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 11466804 - 11466932
Alignment:
Q  90 aaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccctccttgataaag 189  Q
    |||||||||||||| ||||||| ||||  |||||| ||||||  ||| ||| |||||||||||| ||| |  || ||||| ||| |  |||||| |||||    
T  11466804 aaagtaatttggctagcttgtgcttggaaaatttggaaggaacagaataactgtgtcttcaaaaatgcagtgtctgatccctatacaatccttgctaaag 11466903  T
Q  190 ttaagctgaagtctttactgtggttgaaa 218  Q
    | |||||||| |||||  |||||||||||    
T  11466904 taaagctgaattcttttttgtggttgaaa 11466932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 5195289 - 5195352
Alignment:
Q  96 atttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcgg 159  Q
    ||||||||||||||| |||||| |||||| ||||| | ||||||| || ||||||||| |||||    
T  5195289 atttggcttgcttgtatttgggcaatttggaaggagaggaacaactgtatcttcaaaaatgcgg 5195352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 34778048 - 34777994
Alignment:
Q  86 cctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaac 140  Q
    |||||| ||||||||| |||||| ||||||||| || || |||||||||||||||    
T  34778048 cctaaaggtaatttggtttgcttttgtttgggtgatgtggaaggaaatgaacaac 34777994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 20565181 - 20565145
Alignment:
Q  94 taatttggcttgcttgtgtttgggtaatttgaaagga 130  Q
    |||||||||| |||||||||||||||||||| |||||    
T  20565181 taatttggctagcttgtgtttgggtaatttggaagga 20565145  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 48782851 - 48782777
Alignment:
Q  96 atttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatcct 170  Q
    |||||| ||||||||| |||| |||| || ||||||| |||||||||||||||||||| | |||||  |||||||    
T  48782851 atttggtttgcttgtgcttggataatatggaaggaaaggaacaaccgtgtcttcaaaaatacggcaatcgatcct 48782777  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 21141606 - 21141735
Alignment:
Q  41 tcagtttatttatttggcgggtacgccacaatttttacattcattcctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaac 140  Q
    |||||||||| | |||||||||| | | | || || ||||||||   |||| || |||||||||| ||||||||||| ||| || ||||||| |||||||    
T  21141606 tcagtttattcacttggcgggtatgtcgcgatcttcacattcatctttaaaggttatttggcttgattgtgtttgggcaatatggaaggaaaagaacaac 21141705  T
Q  141 cgtgtcttcaaaactgcggcatccgatcct 170  Q
    || ||||| |||| || || | ||||||||    
T  21141706 cgcgtcttgaaaaatgtggtaaccgatcct 21141735  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 32933804 - 32933841
Alignment:
Q  90 aaagtaatttggcttgcttgtgtttgggtaatttgaaa 127  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32933804 aaagtaatttggcttgcttgtgtgtgggtaatttgaaa 32933841  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 20370261 - 20370198
Alignment:
Q  77 acattcattcctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaac 140  Q
    |||||| ||||| ||| |||| |||||||||||||| ||||| ||||| ||||||| |||||||    
T  20370261 acattctttcctgaaaataatctggcttgcttgtgtctgggttatttggaaggaaaggaacaac 20370198  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 26125309 - 26125350
Alignment:
Q  99 tggcttgcttgtgtttgggtaatttgaaaggaaatgaacaac 140  Q
    |||||||||||||| ||| |||||| ||||||||||||||||    
T  26125309 tggcttgcttgtgtgtggataatttaaaaggaaatgaacaac 26125350  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 55498163 - 55498017
Alignment:
Q  78 cattcattcctaaaagtaatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaaaactgcggcatccgatccttatgccc 177  Q
    ||||||||| | || || ||||||||| | ||||| ||||| ||||||||||||| |||||||||  | ||||| | | |||| ||| |||||| | ||     
T  55498163 cattcattcttcaaggttatttggcttccgtgtgtctgggtcatttgaaaggaaaggaacaaccggattttcaacaatacggcttccaatccttttacca 55498064  T
Q  178 tccttgataaagttaagctgaagtctttactgtggttgaaaacaaat 224  Q
    ||||| | ||||| ||| |||| |||||  ||||||||||| |||||    
T  55498063 tccttaacaaagtaaagttgaattcttttttgtggttgaaagcaaat 55498017  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 15206041 - 15206098
Alignment:
Q  94 taatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaa 151  Q
    |||||||| |||| | ||||||||| ||||| ||||||| ||||||||||||||||||    
T  15206041 taatttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccgtgtcttcaa 15206098  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 15245107 - 15245164
Alignment:
Q  94 taatttggcttgcttgtgtttgggtaatttgaaaggaaatgaacaaccgtgtcttcaa 151  Q
    |||||||| |||| | ||||||||| | ||| ||||||| ||||||||||||||||||    
T  15245107 taatttggtttgcatctgtttgggtgacttggaaggaaaggaacaaccgtgtcttcaa 15245164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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