View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11462_low_10 (Length: 315)
Name: NF11462_low_10
Description: NF11462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11462_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 12934582 - 12934883
Alignment:
| Q |
1 |
acacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12934582 |
acacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaatt |
12934681 |
T |
|
| Q |
101 |
gcaaaaatgcgttgccttatcaacaacagaggtggaatatatcgccatggatgaagcagggaaagaaatgttttgactaaaaagatttcttgatcaattg |
200 |
Q |
| |
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||||||||| || |||||||||||||| |||| |||||||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| |
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| T |
12934682 |
gcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggctaaaaagatttcttgatcaattg |
12934781 |
T |
|
| Q |
201 |
cgaatgaagcaggaaagatacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatg |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12934782 |
ggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagcatattgatg |
12934881 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
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|
| T |
12934882 |
tc |
12934883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 17123569 - 17123650
Alignment:
| Q |
221 |
cgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatgtc |
302 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17123569 |
cgttatccattgcgataatcaaagcgttttggattcgagtaagaatgcgatgtaccactcttgtacaaagtatattgatgtc |
17123650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 14177852 - 14178153
Alignment:
| Q |
1 |
acacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14177852 |
acacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaatt |
14177951 |
T |
|
| Q |
101 |
gcaaaaatgcgttgccttatcaacaacagaggtggaatatatcgccatggatgaagcagggaaagaaatgttttgactaaaaagatttcttgatcaattg |
200 |
Q |
| |
|
||||||||| || |||||||||||||| |||| |||||||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| |
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|
| T |
14177952 |
gcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggctaaaaagatttcttgatcaattg |
14178051 |
T |
|
| Q |
201 |
cgaatgaagcaggaaagatacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14178052 |
ggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagcatattgatg |
14178151 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
|
|
| T |
14178152 |
tc |
14178153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 28608021 - 28607720
Alignment:
| Q |
1 |
acacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28608021 |
acacagatgctgatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaatt |
28607922 |
T |
|
| Q |
101 |
gcaaaaatgcgttgccttatcaacaacagaggtggaatatatcgccatggatgaagcagggaaagaaatgttttgactaaaaagatttcttgatcaattg |
200 |
Q |
| |
|
||||||||| || |||||||||||||| |||| |||||||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| |
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|
| T |
28607921 |
gcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggctaaaaagatttcttgatcaattg |
28607822 |
T |
|
| Q |
201 |
cgaatgaagcaggaaagatacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28607821 |
ggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagcatattgatg |
28607722 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
|
|
| T |
28607721 |
tc |
28607720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 15300368 - 15300669
Alignment:
| Q |
1 |
acacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaatt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
15300368 |
acacatatgcggatatggcaggtgacctggatggtagaaagtctgcttcaggaattgtgtttgcttttgcagggtgagctatatcttggcaatctaaatt |
15300467 |
T |
|
| Q |
101 |
gcaaaaatgcgttgccttatcaacaacagaggtggaatatatcgccatggatgaagcagggaaagaaatgttttgactaaaaagatttcttgatcaattg |
200 |
Q |
| |
|
||||||||| || |||||||||||||| |||| |||||||| ||||||| |||||||||||| |||||| |||| ||||||||| ||| |||||||||| |
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|
| T |
15300468 |
gcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggctaaaaagaattcatgatcaattg |
15300567 |
T |
|
| Q |
201 |
cgaatgaagcaggaaagatacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagtatattgatg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
15300568 |
ggaatgaagcaggaaaggtacgttatccattgtgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaaagcatattgatg |
15300667 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
|
|
| T |
15300668 |
tc |
15300669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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