View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11463_high_5 (Length: 240)
Name: NF11463_high_5
Description: NF11463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11463_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 1542988 - 1543130
Alignment:
| Q |
82 |
acagtgaagaactagctaggaagaatatatattctgtttcaactagacactactttgcttttggagctgtttgttctgaagagctttcctacaaactcaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1542988 |
acagtgaagaactagctaggaagaatatatattctgtttcaactagacactactttgcttttggagctgtttgttctgaagagctttcctacaaactcaa |
1543087 |
T |
|
| Q |
182 |
aggtatatacatatacatggttccaaaattctcattaaacttt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1543088 |
tggtatatacatatacatggttccaaaattctcattaaacttt |
1543130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1542907 - 1542935
Alignment:
| Q |
1 |
ttgattccaaataatatatgtgaatggaa |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1542907 |
ttgattccaaataatatatgtgaatggaa |
1542935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 32420427 - 32420535
Alignment:
| Q |
82 |
acagtgaagaactagctaggaagaatatatattctgtttcaactagacactactttgcttttggagctgtttgttctgaagagctttcctacaaactcaa |
181 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
32420427 |
acagtgaagaagaggctaggaagagcatatattctgtttcaactagacactactttgcttttggagctctttgttctgaagagctttcctacaaactgaa |
32420526 |
T |
|
| Q |
182 |
aggtatata |
190 |
Q |
| |
|
||||||||| |
|
|
| T |
32420527 |
aggtatata |
32420535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 32425136 - 32425221
Alignment:
| Q |
108 |
atatattctgtttcaactagacactactttgcttttggagctgtttgttctgaagagctttcctacaaactcaaaggtatatacat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
32425136 |
atatattctgtttcaactagacactactttgcttttggagctctttgttctgaagagcttcgcgacaaactcaaaggtatatacat |
32425221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University