View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11463_low_1 (Length: 583)
Name: NF11463_low_1
Description: NF11463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11463_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 290 - 572
Target Start/End: Complemental strand, 38699820 - 38699542
Alignment:
| Q |
290 |
gattttgcaagttctataatagtttagatgctttagattcacacatcggacgctgaaagttctatgacctccttccttggacgacagataaatttgttat |
389 |
Q |
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| T |
38699820 |
gattttgcaagttctataatagtttagatgcttaagattcacacatcggacgctgaaagttctatgacctcctt----ggacgacagataaatttgttat |
38699725 |
T |
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| Q |
390 |
atatgattgttgtaaattgatgttgcaaaataaacgatggatctgaacaatgcaataaaaaatcatgacaacattttcttcattcgatgttggagaagga |
489 |
Q |
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| T |
38699724 |
atatgattgttgtaaattgatgttgcaaaataaacgatggatctgaacaatgcaataaaaaatcatgacaatattttcttcaatcgatgttggagaagga |
38699625 |
T |
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| Q |
490 |
cctttgctcttcttgtatgtaacctatccaacttaattatgctcaaaccctattccatcacatcagtttacttatgatttcat |
572 |
Q |
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| T |
38699624 |
cctttgctcttcttgtatgtaacctatccaacttaattatgctcaaaccctattccatcacatcagtttacttatgatttcat |
38699542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 38699979 - 38699849
Alignment:
| Q |
16 |
aaatcaaccttcatgagtttcacaagtgcttctttcaacacgattaagatttcttaaagttatatatacaaaattcatgttcttgtcgtaattcatttat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38699979 |
aaatcaaccttcatgagtttcacaagtgcttctttcaacacgattaagatttcttaaagttatatatacaaaattcatgttcttgtcgtaattcatttat |
38699880 |
T |
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| Q |
116 |
aaaagtctttccaaacgggcttgcatgcata |
146 |
Q |
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| T |
38699879 |
aaaagtcattccaaacgggcttgcatgcata |
38699849 |
T |
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