View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11463_low_2 (Length: 405)
Name: NF11463_low_2
Description: NF11463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11463_low_2 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 108 - 405
Target Start/End: Complemental strand, 27100123 - 27099824
Alignment:
| Q |
108 |
atgagactctatgcgttcatgatgcaacacctataatctctcttgtaccatgtctagtgtgtgaaagagtcctacattaaatnnnnnnn-gttggatagt |
206 |
Q |
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| T |
27100123 |
atgagactctatgcattcatgatgcaacacctataatctctcatgtaccatgtctagtgtgcgaaagagtcctacattacataaaaaaaagttggatagt |
27100024 |
T |
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| Q |
207 |
gagaacta-ttatagcagaattttatacttagccaataaaattgtttcttataaaaaaggacgggtccataaaattttaatggtgaagcaccttatatag |
305 |
Q |
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| T |
27100023 |
aagacctaattatagcagaattttatacttagccaataaaattgtttcttataaaaaaggacgtgtccataaaattttaatggtgaagcaccatatatag |
27099924 |
T |
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| Q |
306 |
cattaaataatcatgtgtaacatttcactactggccaaaacattcactaaccactaatatacatcactctataatcaataacagattacagtattataaa |
405 |
Q |
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| T |
27099923 |
cattaaataatcatgtgtaacatttcactactggccaaaacattcactaatcactaatctacatcaatctataatcaataacagattccagtattataaa |
27099824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 27100204 - 27100150
Alignment:
| Q |
51 |
atgttatttaacctcaattcttttattcaatgtagacgttttaactcacacttaa |
105 |
Q |
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| T |
27100204 |
atgttattcaacctcaattctttcattcaatgtagacgttttaactcacacttaa |
27100150 |
T |
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