View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11464_high_1 (Length: 559)

Name: NF11464_high_1
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11464_high_1
NF11464_high_1
[»] chr7 (8 HSPs)
chr7 (114-548)||(6844011-6844452)
chr7 (365-548)||(6848709-6848892)
chr7 (112-325)||(6889025-6889248)
chr7 (358-545)||(6889257-6889444)
chr7 (130-423)||(30598112-30598409)
chr7 (106-304)||(9235844-9236051)
chr7 (259-318)||(32413660-32413719)
chr7 (200-240)||(32413597-32413637)
[»] chr8 (2 HSPs)
chr8 (259-389)||(27701818-27701948)
chr8 (258-323)||(35335884-35335949)
[»] chr3 (13 HSPs)
chr3 (260-340)||(7125963-7126043)
chr3 (259-390)||(476075-476206)
chr3 (259-394)||(7118800-7118935)
chr3 (262-340)||(778168-778246)
chr3 (262-328)||(5361011-5361077)
chr3 (255-323)||(25601739-25601807)
chr3 (259-302)||(480987-481030)
chr3 (259-302)||(1186267-1186310)
chr3 (259-302)||(1204331-1204374)
chr3 (259-302)||(1304716-1304759)
chr3 (256-311)||(21537070-21537125)
chr3 (259-323)||(25596938-25597002)
chr3 (258-325)||(13490911-13490978)
[»] chr5 (4 HSPs)
chr5 (259-302)||(33958083-33958126)
chr5 (282-325)||(25216000-25216043)
chr5 (282-325)||(25280152-25280195)
chr5 (259-319)||(28091103-28091163)
[»] scaffold0438 (1 HSPs)
scaffold0438 (259-302)||(5353-5396)
[»] chr6 (4 HSPs)
chr6 (259-369)||(7175366-7175476)
chr6 (259-319)||(7115528-7115588)
chr6 (259-319)||(7120600-7120660)
chr6 (259-319)||(7124004-7124064)
[»] chr1 (1 HSPs)
chr1 (256-416)||(28928345-28928505)
[»] chr2 (3 HSPs)
chr2 (259-302)||(43864058-43864101)
chr2 (259-302)||(43875225-43875268)
chr2 (261-302)||(43867549-43867590)
[»] scaffold1462 (1 HSPs)
scaffold1462 (255-305)||(1037-1087)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 6e-94; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 114 - 548
Target Start/End: Original strand, 6844011 - 6844452
Alignment:
Q  114 gctgaatagcttctaactaactcacaggttctgaaac-----aatgaagtgaggaagaagaaaatgcaacgtcgatgtaaaagaagatcacctcagtgat 208  Q
    |||||||||||||||||| ||||||||||||||||||     ||||||   | ||||||||||||  |||| ||||||| ||||||| | ||||||||||    
T  6844011 gctgaatagcttctaactcactcacaggttctgaaacgaaacaatgaaacaaagaagaagaaaatataacgacgatgtagaagaagaccgcctcagtgat 6844110  T
Q  209 ttatccgattgtgttattcttcacatactctcttttgtttacgccgtgc--tgttcaaacttgcattttatccaaaagatggaacaatctctggaaacat 306  Q
    ||| |||||||||||||||||||||||||||||||| |  | ||  |||  |||||||||||||||| |||||||||||||||||||||| |||||||||    
T  6844111 ttacccgattgtgttattcttcacatactctcttttttggatgcaatgcgctgttcaaacttgcattctatccaaaagatggaacaatctttggaaacat 6844210  T
Q  307 cttccaacccttatattaaattcatcacactttatgagtatcaaaagtttcaataaatttgtgtctcgtattttgtctcttcgtaatgcatcaaccccac 406  Q
    ||||| || |||||||| ||  | |||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||  || | |||    
T  6844211 cttcccactcttatattgaagacttcacactttacgagtatgacaagtttcaataaatttgtgtctcgtattttgtctcttcgtaatgcaaaaagctcac 6844310  T
Q  407 tgcacgctctcgattttgagcatcatggtattgtggagccttgtctactgcaacggatcatcaaatatgctgtttcacatcatgtccaagaattaagtat 506  Q
    ||| |  |||| |||||||||   |||||| |||| |||   || |||| ||||||||  |||||||||||||||||||  |||||||  ||||||||||    
T  6844311 tgcgcattctccattttgagcgcgatggtactgtgcagcaccgtttactccaacggatggtcaaatatgctgtttcacacaatgtccagcaattaagtat 6844410  T
Q  507 cggtatcatatgtgatattcaagattttccaacttgcttctt 548  Q
    |  |  ||||| |||||||||| |||||||||||||||||||    
T  6844411 caatcccatatctgatattcaacattttccaacttgcttctt 6844452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 365 - 548
Target Start/End: Original strand, 6848709 - 6848892
Alignment:
Q  365 ttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcacgctctcgattttgagcatcatggtattgtggagccttgtctactgcaacggat 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||   |||||||||||||| | ||||||||||||| |||    
T  6848709 ttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcgctatctcgattttgagcgcgatggtattgtggagacctgtctactgcaacagat 6848808  T
Q  465 catcaaatatgctgtttcacatcatgtccaagaattaagtatcggtatcatatgtgatattcaagattttccaacttgcttctt 548  Q
    | ||||||||||| |||||||||||||| |||| ||||| ||| ||||||  |||||||||||||||||| |||||||||||||    
T  6848809 cttcaaatatgctttttcacatcatgtcgaagagttaaggatcagtatcagctgtgatattcaagatttttcaacttgcttctt 6848892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 112 - 325
Target Start/End: Original strand, 6889025 - 6889248
Alignment:
Q  112 tcgctgaatagcttctaactaactcacaggttctgaaacaatgaagtgaggaagaagaaaatgcaacgtcgatgtaaaagaagatca------cctcagt 205  Q
    |||||||||  ||||| ||| |||||||||||||||||||||||||  |||||||| ||||| ||||| |||||||||||||||| |      |||||||    
T  6889025 tcgctgaatcacttcttactcactcacaggttctgaaacaatgaagccaggaagaaaaaaatacaacgacgatgtaaaagaagatgaagatcgcctcagt 6889124  T
Q  206 gatttatccgattgtgttattcttcacatactctcttttgtttacgccgt----gctgttcaaacttgcattttatccaaaagatggaacaatctctgga 301  Q
    || ||| |||||||||||||||||||||||||||||||| |  || || |    |||||||||||||||||| |||||||||||||||||||||||||||    
T  6889125 gacttacccgattgtgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatctctgga 6889224  T
Q  302 aacatcttccaacccttatattaa 325  Q
    || ||||||| |||||||||||||    
T  6889225 aatatcttcctacccttatattaa 6889248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 358 - 545
Target Start/End: Original strand, 6889257 - 6889444
Alignment:
Q  358 aataaatttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcacgctctcgattttgagcatcatggtattgtggagccttgtctactgc 457  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||  ||||||| | || | ||  ||||||| |    
T  6889257 aataaatttgtgtctcgcattttgtctcttcgtaatgcgtcaaccccactgcgcgctctccattttcagcgccatggtactatgtatccccgtctactcc 6889356  T
Q  458 aacggatcatcaaatatgctgtttcacatcatgtccaagaattaagtatcggtatcatatgtgatattcaagattttccaacttgctt 545  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||||||||  | |||  | |||||||||| ||||||||||||||||    
T  6889357 aacggatgatcaaatatgctgtttcacatcacgtccaggaattaagtatcaatctcagctctgatattcaacattttccaacttgctt 6889444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 130 - 423
Target Start/End: Complemental strand, 30598409 - 30598112
Alignment:
Q  130 ctaactcacaggttctgaaacaatgaagtgaggaagaagaaaatgcaacgtcgatgtaaaagaagatcacctcagtgatttatccgattgtgttattctt 229  Q
    ||||||||||| |||  | ||||||||  ||||||||| ||||  ||||| | ||||||||||||||| ||||||||||||| || |||||||| |||||    
T  30598409 ctaactcacagcttcacagacaatgaaacgaggaagaaaaaaacacaacgactatgtaaaagaagatcgcctcagtgatttacccaattgtgttcttctt 30598310  T
Q  230 cacatactctc--ttttgtttac-gccgt-gctgttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaa 325  Q
    | |||||| ||  |||||  | | | ||  |||||| |||||||||   | || |  |||||||   |||| ||||| |||||||| ||||||||||||     
T  30598309 cgcatactatcccttttggatgctgacgaagctgttaaaacttgcacaatctctagtagatggagacatctttggaagcatcttcccacccttatattat 30598210  T
Q  326 attcatcacactttatgagtatcaaaagtttcaataaatttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcacgctctcgatttt 423  Q
     ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||  |||||||| ||||||||| | ||||||    
T  30598209 gttcttcacactttatgaggatcaaaagtttcaatagatttgtgtctcgtattttgtgtcttcgtgatgtgtcaaccccgctgcacgctgttgatttt 30598112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 304
Target Start/End: Complemental strand, 9236051 - 9235844
Alignment:
Q  106 taattgtcgctgaatagcttctaactaactcacaggttctgaaacaa-----tgaagtgaggaagaagaaaatgcaacgtcgatgtaaaagaagatcacc 200  Q
    ||||||||||| |||||||||||||| || |||||||||| ||||||     | ||  ||||||||||||||     || | || |||||||||| | ||    
T  9236051 taattgtcgctaaatagcttctaactcacccacaggttctcaaacaaaacgatcaaaagaggaagaagaaaagatcgcgaccatttaaaagaagaccgcc 9235952  T
Q  201 tcagtgatttatccgattgtgttattcttcacatactctcttttgtttacgcc----gtgctgttcaaacttgcattttatccaaaagatggaacaatct 296  Q
    ||| ||||||| ||||||||||||||||||||||| ||||| || |  |||||    ||| |||||||||||||||| | ||||||||||||||||||||    
T  9235951 tcaatgatttacccgattgtgttattcttcacataatctctgttttggacgccgaatgtgttgttcaaacttgcattctctccaaaagatggaacaatct 9235852  T
Q  297 ctggaaac 304  Q
     |||||||    
T  9235851 ttggaaac 9235844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 32413660 - 32413719
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctt 318  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| | ||||||| |||||    
T  32413660 gttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttccatccctt 32413719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 32413597 - 32413637
Alignment:
Q  200 ctcagtgatttatccgattgtgttattcttcacatactctc 240  Q
    |||||||||||||| ||||||||| | ||||||||||||||    
T  32413597 ctcagtgatttatctgattgtgttttacttcacatactctc 32413637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 259 - 389
Target Start/End: Complemental strand, 27701948 - 27701818
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacactttatgagtatcaaaagtttca 358  Q
    |||||||||  |||| | |||| ||||||||||||||||||||||| |||||||||||||| |||||| || ||||||||||  | | |||| ||||| |    
T  27701948 gttcaaactaccattctttccacaagatggaacaatctctggaaacgtcttccaacccttagattaaactcctcacactttaaaactctcaagagtttta 27701849  T
Q  359 ataaatttgtgtctcgtattttgtctcttcg 389  Q
      ||||| ||||||||  |||||||||||||    
T  27701848 ccaaattcgtgtctcgggttttgtctcttcg 27701818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 35335884 - 35335949
Alignment:
Q  258 tgttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatt 323  Q
    ||||||||||||| |||| ||||||||||||||  |||| ||||||| | ||||||| ||||||||    
T  35335884 tgttcaaacttgcgttttgtccaaaagatggaaacatctatggaaacgtattccaacacttatatt 35335949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 7125963 - 7126043
Alignment:
Q  260 ttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacacttta 340  Q
    |||||||||| || || |||||||||||||| ||||||||||||| |||||||||||||| ||||| ||| ||||| ||||    
T  7125963 ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaacccttacattaatttcttcacaattta 7126043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 390
Target Start/End: Original strand, 476075 - 476206
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacactttatgagtatcaaaagtttca 358  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||   |||||| ||||||| | ||| ||| ||| |||||| ||    || |||||||     
T  476075 gttcaaacttgtattttatccaaaagatggatcaatctctggaatactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcg 476174  T
Q  359 ataaatttgtgtctcgtattttgtctcttcgt 390  Q
    || ||||| ||||||  ||||| |||||||||    
T  476175 atcaatttctgtctcagattttctctcttcgt 476206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 394
Target Start/End: Original strand, 7118800 - 7118935
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacactttatgagtatcaaaagtttca 358  Q
    ||||||||||  ||| | |||||||||||||| ||||| ||||| |||||||| ||||||| | ||| ||| |||||||||| || | |||||  |||||    
T  7118800 gttcaaacttctattctctccaaaagatggaaaaatctatggaagcatcttcccacccttacactaacttcttcacactttaagactctcaaagctttca 7118899  T
Q  359 ataaatttgtgtctcgtattttgtctcttcgtaatg 394  Q
      ||||| ||| ||| | ||||||||||||| ||||    
T  7118900 caaaattcgtgactcctcttttgtctcttcgcaatg 7118935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 778246 - 778168
Alignment:
Q  262 caaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacacttta 340  Q
    |||||||||||||| ||||||||||||| |||||||||||||  ||| || || |||| ||||| ||| ||||||||||    
T  778246 caaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacacttta 778168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 5361077 - 5361011
Alignment:
Q  262 caaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaatt 328  Q
    |||||||||||||||||||||||||||| ||||||||||||   ||||||||| |||  ||||||||    
T  5361077 caaacttgcattttatccaaaagatggaccaatctctggaagactcttccaactcttgcattaaatt 5361011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 25601739 - 25601807
Alignment:
Q  255 tgctgttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatt 323  Q
    ||||||||||||||||||||| |||| |||||||||  |||| ||||||| | |||| |||||||||||    
T  25601739 tgctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatatt 25601807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 480987 - 481030
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||    
T  480987 gttcaaacttgtattttatccaaaagatggatcaatctctggaa 481030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 1186267 - 1186310
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  1186267 gttcaaacttgcattttatcgaaaagatggatcaatctctggaa 1186310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 1204331 - 1204374
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  1204331 gttcaaacttgcattttatcgaaaagatggatcaatctctggaa 1204374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 1304759 - 1304716
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  1304759 gttcaaacttgcattttatcgaaaagatggatcaatctctggaa 1304716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 21537070 - 21537125
Alignment:
Q  256 gctgttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttcc 311  Q
    |||||||||||||| || |||||||||||||||||  |||| ||||||||||||||    
T  21537070 gctgttcaaacttgtatcttatccaaaagatggaaggatctttggaaacatcttcc 21537125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 25596938 - 25597002
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatt 323  Q
    ||||||||||||||||| || |  |||||||| ||||| ||||||||| |||| |||||||||||    
T  25596938 gttcaaacttgcattttgtctacgagatggaagaatctttggaaacatattcccacccttatatt 25597002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 13490978 - 13490911
Alignment:
Q  258 tgttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaa 325  Q
    |||||||||||  |||||||||||||||||||| ||| | |||||  ||||||| ||||||| |||||    
T  13490978 tgttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaa 13490911  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 33958126 - 33958083
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  33958126 gttcaaacttgcattttatccaaaagatggatcaatctctggaa 33958083  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Original strand, 25216000 - 25216043
Alignment:
Q  282 aagatggaacaatctctggaaacatcttccaacccttatattaa 325  Q
    |||||||||||||||||||||||||||| || |||||| |||||    
T  25216000 aagatggaacaatctctggaaacatctttcatcccttaaattaa 25216043  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Original strand, 25280152 - 25280195
Alignment:
Q  282 aagatggaacaatctctggaaacatcttccaacccttatattaa 325  Q
    |||||||||||||||||||||||||||| || |||||| |||||    
T  25280152 aagatggaacaatctctggaaacatctttcatcccttaaattaa 25280195  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 28091103 - 28091163
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctta 319  Q
    ||||||||||||||| | ||||||||||   ||||||||||||| | |||||| |||||||    
T  28091103 gttcaaacttgcattctctccaaaagattcgacaatctctggaagcgtcttcccaccctta 28091163  T

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Target: scaffold0438 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 5353 - 5396
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  5353 gttcaaacatgcattttatccaaaagatggatcaatctctggaa 5396  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 369
Target Start/End: Complemental strand, 7175476 - 7175366
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacactttatgagtatcaaaagtttca 358  Q
    ||||||||||||||||||||||  |||||||| ||||||||||| |  ||| ||| ||||||| ||| ||| ||||| |||| || | | ||| ||||||    
T  7175476 gttcaaacttgcattttatccactagatggaagaatctctggaagcgcctttcaaaccttatagtaagttcttcacaatttaagaatttaaaatgtttca 7175377  T
Q  359 ataaatttgtg 369  Q
      |||||||||    
T  7175376 tcaaatttgtg 7175366  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 7115588 - 7115528
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctta 319  Q
    |||||||||||  |||| |||||||||||||| |||||||||||   |||||||| |||||    
T  7115588 gttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagcctta 7115528  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 7120660 - 7120600
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctta 319  Q
    |||||||||||  |||| |||||||||||||| |||||||||||   |||||||| |||||    
T  7120660 gttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagcctta 7120600  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 7124064 - 7124004
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctta 319  Q
    |||||||||||  |||| |||||||||||||| |||||||||||   |||||||| |||||    
T  7124064 gttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagcctta 7124004  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 416
Target Start/End: Complemental strand, 28928505 - 28928345
Alignment:
Q  256 gctgttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacactttatgagtatcaaaagtt 355  Q
    |||||||||||||||||  | ||||   ||||||| ||||||||||| | |||||| ||||||| ||||| | | ||||| |||| |  | ||||  |||    
T  28928505 gctgttcaaacttgcatactctccactcgatggaagaatctctggaagcgtcttcccacccttacattaagtccctcacattttacgtctttcaactgtt 28928406  T
Q  356 tcaataaatttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcacgctct 416  Q
    |||  | ||| ||||||| |||||||| ||| ||| |||| |||||| || ||||||||||    
T  28928405 tcaccacattcgtgtctcatattttgtttctacgtgatgcctcaaccacattgcacgctct 28928345  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 43864101 - 43864058
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||    
T  43864101 gttcaaacttgcattttgtccaaaagatggatcaatctttggaa 43864058  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 43875268 - 43875225
Alignment:
Q  259 gttcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||    
T  43875268 gttcaaacttgcattttgtccaaaagatggatcaatctttggaa 43875225  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 43867590 - 43867549
Alignment:
Q  261 tcaaacttgcattttatccaaaagatggaacaatctctggaa 302  Q
    ||||||||||||||| ||||||||||||| || |||||||||    
T  43867590 tcaaacttgcattttgtccaaaagatggatcactctctggaa 43867549  T

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Target: scaffold1462 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 1037 - 1087
Alignment:
Q  255 tgctgttcaaacttgcattttatccaaaagatggaacaatctctggaaaca 305  Q
    |||||||||||||||||||||||| || ||||||||  || ||||||||||    
T  1037 tgctgttcaaacttgcattttatcaaagagatggaaagatatctggaaaca 1087  T

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