View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_high_15 (Length: 385)
Name: NF11464_high_15
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 31909820 - 31909589
Alignment:
| Q |
1 |
catgattcaaaatcagaacgaaaccccccgaaaataaccaataatattgttccatcggcagcaaaaagccggctttatatttctgcagaattgttataca |
100 |
Q |
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| T |
31909820 |
catgattcaaaatcagaacgaaaccccccgaaaataaccaataatattgttccatcggcagcaaaaagccggctttatatttctgcagaattgttataca |
31909721 |
T |
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| Q |
101 |
tactgccaaccgatgccttgcagcatcaactccagttacagagcccaaatcgccaagaaggtctagaatcatacaaactttagcacctaagcatcaaatt |
200 |
Q |
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| T |
31909720 |
tactgccaaccgatgccttgcagcatcaactccagttacagagcccaaatcgccaagaaggtctagaatcatacaaactttagcacctaagcatcaaatt |
31909621 |
T |
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| Q |
201 |
tgaaggaaaaactattataattctgactttag |
232 |
Q |
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| T |
31909620 |
tgaaggaaaaactattataattctgactttag |
31909589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 31909528 - 31909436
Alignment:
| Q |
293 |
attctcatttcaaattctaagtcttacacatgttctcccttgaataaatcaagtcttaaacccaaaatcatggataacaataactaaacattc |
385 |
Q |
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| T |
31909528 |
attctcatttcaaattctaagtcttacacatgttctcccttgaataaatcaagtcttaaacccaaaatcatggatagcaataactaaacattc |
31909436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 31901059 - 31900902
Alignment:
| Q |
74 |
tttatatttctgcagaattgttatacatactgccaaccgatgccttgcagcatcaactccagttacagagcccaaatcgccaagaaggtctagaatcata |
173 |
Q |
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| T |
31901059 |
tttatatttctgcagcattgttctacaggctgccaaccgatgccttgcagcatcaactccagttacagagcccgaatcaccaagaaggtcaagcatcata |
31900960 |
T |
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| Q |
174 |
caaactttagcacctaagcatcaaatttgaaggaaaaactattataattctgactttag |
232 |
Q |
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|||| ||||||||||| |||| ||||||||||||| | |||||||| ||||||||| |
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| T |
31900959 |
caaagtttagcacctagacatcgcatttgaaggaaaatc-attataatcatgactttag |
31900902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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