View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_high_2 (Length: 520)
Name: NF11464_high_2
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 3 - 498
Target Start/End: Complemental strand, 47122806 - 47122295
Alignment:
| Q |
3 |
ttaaagataaattagcaaatgtagcttgtagcaaaagcgtctcttatatgaatgtgtgaatatcatttcttgaccattttgattataagtacttaggctt |
102 |
Q |
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| T |
47122806 |
ttaaagataaattagcaaatgtagcttgtagcaaaagcgtctcttatatgaatgtgtgaatatcatttcttgaccattttgattataagtacttaggctt |
47122707 |
T |
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| Q |
103 |
gcaaggtaattttcaatttgatgtggatttttaagtttttataagaaaataattttatttgagataaaacaatttgttaaaggattatataaatttatcc |
202 |
Q |
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| T |
47122706 |
gcaaggtaattttcaatttgatgtggatttttaagtttttataagaaaataattttatttgagataaaacaatttgttaaaggattatataaatttatcc |
47122607 |
T |
|
| Q |
203 |
ggaggatgatatttgagtcagagaagtatatggacactacagaatacaaataatatacttttaatcacttgtttagggacttaaaaatgtannnnnnnna |
302 |
Q |
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| T |
47122606 |
ggaggatgacattggagtcagagaagtatatggacactacataatacaaataatatacttttagtcactcgtttaaggacttaaaaatgtatttttgta- |
47122508 |
T |
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| Q |
303 |
tttgtatggactacaaagtggatacaaagactaaaaacaaaattcactatatttgta-gaacccaaaactaattta-----------------accaaat |
384 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
47122507 |
-ttgtatggactacaaaatggatacaaagattaaaaacaaaattcactatatttgtaggaacccaaaactaatttaatcttatttaaaaaagtaccaaat |
47122409 |
T |
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| Q |
385 |
tatgtaaaagtagagatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacgagtaataggcacacaactactaggaatataaa |
484 |
Q |
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| T |
47122408 |
tatgtaaaagtagagatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacaagtaataggcacacaactactaggaatataaa |
47122309 |
T |
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| Q |
485 |
cctaatacggtcct |
498 |
Q |
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| T |
47122308 |
cctaatacggtcct |
47122295 |
T |
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