View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11464_high_23 (Length: 250)

Name: NF11464_high_23
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11464_high_23
NF11464_high_23
[»] chr4 (2 HSPs)
chr4 (161-239)||(31265535-31265613)
chr4 (60-94)||(31265434-31265468)
[»] chr5 (1 HSPs)
chr5 (39-91)||(21268752-21268805)
[»] chr7 (1 HSPs)
chr7 (42-91)||(14732482-14732532)
[»] chr6 (1 HSPs)
chr6 (39-91)||(442148-442201)
[»] chr3 (1 HSPs)
chr3 (48-91)||(16133193-16133237)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 31265535 - 31265613
Alignment:
Q  161 catagatgttactgaaaaggagttttaagaaactacgttgatataaaacatagattaaggaattttgaatagctttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265535 catagatgttactgaaaaggagttttaagaaactacgttgatataaaacatagattaaggaattttgaatagctttcat 31265613  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 31265434 - 31265468
Alignment:
Q  60 aaagaactaaattaggctcatatatgaaaagaaca 94  Q
    |||||||||||||||||||||||||||||||||||    
T  31265434 aaagaactaaattaggctcatatatgaaaagaaca 31265468  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 21268805 - 21268752
Alignment:
Q  39 ttaatccagcaaccaaatctgaaagaactaaattaggctcatat-atgaaaaga 91  Q
    |||| ||| |||||||||||||| |||||||||||||||||||| |||||||||    
T  21268805 ttaacccaacaaccaaatctgaaggaactaaattaggctcatatcatgaaaaga 21268752  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 14732482 - 14732532
Alignment:
Q  42 atccagcaaccaaatctgaaagaactaaattaggctcatat-atgaaaaga 91  Q
    ||||| ||| |||||||||| |||||||||||||||||||| |||||||||    
T  14732482 atccaacaatcaaatctgaaggaactaaattaggctcatatcatgaaaaga 14732532  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 442201 - 442148
Alignment:
Q  39 ttaatccagcaaccaaatctgaaagaactaaattaggctcatat-atgaaaaga 91  Q
    |||| ||| ||||||||| |||| |||||||||||||||||||| |||||||||    
T  442201 ttaacccaacaaccaaatatgaaggaactaaattaggctcatatcatgaaaaga 442148  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 16133237 - 16133193
Alignment:
Q  48 caaccaaatctgaaagaactaaattaggctcatat-atgaaaaga 91  Q
    ||||||||||| || |||||||||||||||||||| |||||||||    
T  16133237 caaccaaatcttaaggaactaaattaggctcatatcatgaaaaga 16133193  T

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