View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_high_25 (Length: 238)
Name: NF11464_high_25
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_high_25 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6448420 - 6448199
Alignment:
| Q |
1 |
atggaagtgcaccgacgaatctagagtttgcaggctttggttgtctctttagaaggcaagatggaagcttcgtatttgggctccacgggagtgttggttg |
100 |
Q |
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| T |
6448420 |
atggaagtgcaccgacgaatctagagtttgcaggctttggttgtctctttagaaggcaagatggaagcttcatatttgggctccacgggagtgttggttg |
6448321 |
T |
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| Q |
101 |
gtctaatatccttcatgctgagatttagaatttgtgttacaaagcggaaataaagtcttttgtatgttactatgactatttgcatgtattctaatttgtt |
200 |
Q |
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| T |
6448320 |
gtctaatatccttcatgctgagatttagaatttgtgttacaaagcggaaataaagtcttttgtatgttactatgactatttgcatgtattctaatttgtt |
6448221 |
T |
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| Q |
201 |
ggagcgtataaaggtttatctg |
222 |
Q |
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| T |
6448220 |
ggagcgtataaaggtttatctg |
6448199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 29907624 - 29907532
Alignment:
| Q |
33 |
ggctttggttgtctctttagaaggcaagatggaagcttcgtatttgggctccacgggagtgttggttggtctaatatccttcatgctgagatt |
125 |
Q |
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| T |
29907624 |
ggcttttgtggtctcattagaagacatgatgggagcttcatatttaggttccatatgagtgttggtctgtttaatatccttcatgctgagatt |
29907532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 6230 - 6310
Alignment:
| Q |
38 |
tggttgtctctttagaaggcaagatggaagcttcgtatttgggctccacgggagtgttggttggtctaatatccttcatgc |
118 |
Q |
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| T |
6230 |
tggttgtctcgttcgaaggcaagatggaagtttcatatttgggttccacggaagtgttcgttggtctaatatccttcatgc |
6310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 45486647 - 45486710
Alignment:
| Q |
60 |
gatggaagcttcgtatttgggctccacgggagtgttggttggtctaatatccttcatgctgaga |
123 |
Q |
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| T |
45486647 |
gatgggagcttcatattttggttccatgggagtgttggttggtctaatatccttcaagctgaga |
45486710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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