View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_high_3 (Length: 503)
Name: NF11464_high_3
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 67 - 484
Target Start/End: Complemental strand, 25900419 - 25900001
Alignment:
| Q |
67 |
gagacctgttgtgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg |
166 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25900419 |
gagacctgttgcgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg |
25900320 |
T |
|
| Q |
167 |
tatttcacatgatgtatgtaaactacactatttggtcatgactttttgatatggtgtgagaccagttacaatgtgcgggagtagttggtttgtttgcggt |
266 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
25900319 |
tatttcacatgatgtatgtaa-ctacactatttggtcatgactttttgatatggtgtgagaccagttacaatgtgtgggagtagttggtttgtttgcgtt |
25900221 |
T |
|
| Q |
267 |
tgtatgctcatacttcagat-----aactcatctgcgatatttggcgtaggtctgtttggtcattttatgtaacaacgttagaagaagacattaacaaag |
361 |
Q |
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|||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25900220 |
tgtatgctcatacttcagatcagataactcatgtacgatatttggcgtgggtctgtttggtcattttatgtaacaacgttagaaga---cattaacaaag |
25900124 |
T |
|
| Q |
362 |
ctcttcatacacttgaaacttaaaagaaggcatcatttttacaatattaaattaaaaaatcatctatgtctctcacttgcacaacttattgatggtattt |
461 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25900123 |
ctcttcgtacacttgaaacttaaaagaaggcatcatttttacaatattaaattaaaaaatcatctatgtctctcacttgcacaacttattgatggtattt |
25900024 |
T |
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| Q |
462 |
ggtgcattatcgttgattctaac |
484 |
Q |
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||||||||||||||||||||||| |
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| T |
25900023 |
ggtgcattatcgttgattctaac |
25900001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 67 - 410
Target Start/End: Original strand, 40067818 - 40068135
Alignment:
| Q |
67 |
gagacctgttgtgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg |
166 |
Q |
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||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40067818 |
gagacctgtcgcgccttttggaagtgcaagtagaaagcctcatgttgattcttctcttttacatcgttgcttaccagatgagctgctctttgaggtattg |
40067917 |
T |
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| Q |
167 |
tatttcacatgatgtatgtaaactacactatttggtcatgactttttgatatggtgtgagaccagttacaatgtgcgggagtagttggtttgtttgcggt |
266 |
Q |
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|||||| |||||| | |||||||||||| ||||||||| ||||||| |||||| || ||||| | || ||||| || |
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| T |
40067918 |
catttcatatgatg-----cagctacactatttgatcatgacttcttgatattgtgtgacactagtta--------------actttatttgt-----gt |
40067993 |
T |
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| Q |
267 |
tgtatgctcatacttcagataactcatctgcgatatttggcgtaggtctgtttggtca-ttttatgtaacaacgttagaagaagacattaacaaagctct |
365 |
Q |
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|||||| || ||||||||| ||||||| ||||||||||| || | |||||||||||| ||||||| |||| |||| |||||||||| || | |||| |
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| T |
40067994 |
tgtatgttcctacttcagacaactcatatgcgatatttgatgtggatctgtttggtcatttttatgcaacatcgtt---agaagacattggcagatctct |
40068090 |
T |
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| Q |
366 |
tcatacacttgaaacttaaaagaaggcatcatttttacaatatta |
410 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
40068091 |
tcatacacctgaaacttaaatgaaggcatcatttttacaatatta |
40068135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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