View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_high_7 (Length: 424)
Name: NF11464_high_7
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 43483855 - 43483446
Alignment:
| Q |
11 |
cataggatatgactaatttgaatgaggtttggacaaactagcttaatgattactataaattactacaatgttgatgaattataattgtnnnnnnntaaaa |
110 |
Q |
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| T |
43483855 |
cataggatatgactaatttgaatgaggtttggacaaactagcttaatgattactataaattactacaatgttgatgaattataattgtaaaaaaataaaa |
43483756 |
T |
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| Q |
111 |
tgtcaatttcagtgaaaaataattaagtcagggtagattacctggactgtcgtttcttgcgggaaaagtaaa-----------tgataagcgactaaatc |
199 |
Q |
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| T |
43483755 |
tgtcaatttcagtgaaaaataattaagtcagggtggattacctggactgtcgtttcttgcgggaaaagtaaaacactcaatagtgataagcgactaaatc |
43483656 |
T |
|
| Q |
200 |
gttttataacttttttcaatcacaataatgaaaggtggcagcccttaaagccaaaagcttaggtgaagtgtttggttgaaacttgaaagtacaaattaag |
299 |
Q |
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| T |
43483655 |
gttttttaacttttttcaatcacaataatgaaaggtggcagcccttaaagccaaaagcttaggtgaagtgtttggttgaaacttgaaagtacaaattaag |
43483556 |
T |
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| Q |
300 |
gatcagtgagagattaattgggagacatctgtagtttgtgtaacttctaaatgttttcttttatttttgacatcttatggaaagagtttatatctctcca |
399 |
Q |
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| T |
43483555 |
gatctgtgagagattaattgggagacatctgtagtttgtgtaacttctaaatgttttcttttatttttgacatcttatggaatgagtttatatctctcca |
43483456 |
T |
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| Q |
400 |
tttaatatct |
409 |
Q |
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| T |
43483455 |
tttaatatct |
43483446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 43472579 - 43472440
Alignment:
| Q |
206 |
taacttttttcaatcacaataatgaaaggtggcagcccttaaagccaaaagcttaggtgaagtgtttggttgaaacttgaaagtacaaattaaggatcag |
305 |
Q |
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||||||||||||||||||||||| || |||||| |||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
43472579 |
taacttttttcaatcacaataattgaaagtggcaatccttaaagacaaaagtctaggtgaagtgtttggttgaaacttgcaagtacaaattaaggatttg |
43472480 |
T |
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| Q |
306 |
tgagagattaattgggagacatctgtagtttgtgtaactt |
345 |
Q |
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| T |
43472479 |
tgagagattaattgggagacatctgtagtttttggaactt |
43472440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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