View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_low_11 (Length: 403)
Name: NF11464_low_11
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 42463124 - 42463379
Alignment:
| Q |
19 |
ttctatggctactacaggtgttatcaaagtaccacgctgttcttcttcatcatcaaatataagaaacaaagccattcaaagaagtctttcattctcatca |
118 |
Q |
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| T |
42463124 |
ttctatggctactacaggtgttatcaaagtaccacgttgttcttcttcatcatcaaatataagaaacaaagccattcaaagaagtctttcattctcatca |
42463223 |
T |
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| Q |
119 |
tcacaactctctggagacaagattgttacagtttctggtggtgcaggaagaggaaggtgcatccggaagcatgtgatcgttactcctaaggctgtttctg |
218 |
Q |
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| T |
42463224 |
tcacaactctctggagacaagattgttacagtttctggtggtgcaggaagaggaaggtgcatccggaagcatgtgatcgtcactcctaaggctgtttctg |
42463323 |
T |
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| Q |
219 |
attcacagaattctcagacttgccttgatcctgacgctagcagagtgagtttatat |
274 |
Q |
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| T |
42463324 |
attcacagaattctcagacttgccttgatcctgacgctagcagagtgagtttatat |
42463379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 42463412 - 42463495
Alignment:
| Q |
307 |
agagctaagagctgaatgaaaagtagttaaaattgttaattttctatcacatatgagtgtatgtcaaatcatatgttagtgttc |
390 |
Q |
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| T |
42463412 |
agagctaagagctgaatgaaaagtagttaaaattgttaattttctatcacatatgagtgtatgtcaaatcatatgttagtgttc |
42463495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 37076814 - 37076882
Alignment:
| Q |
201 |
ctcctaaggctgtttctgattcacagaattctcagacttgccttgatcctgacgctagcagagtgagtt |
269 |
Q |
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| T |
37076814 |
ctcctaaggctgtttctgattccaaaaactctcagacttgtcttgatccagatgctagcagagttagtt |
37076882 |
T |
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