View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_low_14 (Length: 386)
Name: NF11464_low_14
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Complemental strand, 37891149 - 37890790
Alignment:
| Q |
11 |
caaaggatatacattgctaaatcttcctaacctagtggaaatatgtggatgcatttgaattagttaaaaaagatattataaaatgggttttctattttat |
110 |
Q |
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| T |
37891149 |
caaaggatatacattgctaaatcttcctaacctagtggaaatatgtggatgcatttgaattagttaaaaaagatattataaaatgggttttctattttat |
37891050 |
T |
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| Q |
111 |
gttagaccaggaatattgttcttacacaaattcagcgatgaataaaacaaacgggtggttttaataataacactaccacagcacaacaggttcaagtcaa |
210 |
Q |
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| T |
37891049 |
gttagaccaggaattttgttcttacacaaattcagcgatgaataaaacaaacgggtggttttaataataacactaccacagcacaacaggttcaagtcaa |
37890950 |
T |
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| Q |
211 |
gttnnnnnnnnttctatctgaaaggtaaccttgaaaattcagcagagaggcattattacaacaattttgcagtacaactggacctgaatcataaaatatt |
310 |
Q |
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| T |
37890949 |
gttaaaaaaaattctatctgaaaggtaaccttgaaaattcagcagagaggcattattacaacaattttgcagtacaactggacctgaatcataaaatatt |
37890850 |
T |
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| Q |
311 |
tttgacctgaaagagcaacacagataagacatttcattgtcattgaaaatgacctaaaac |
370 |
Q |
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| T |
37890849 |
tttgacctgaaagagcaacacagataagacatttcattgtcattgaaaatgacctaaaac |
37890790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 231 - 369
Target Start/End: Complemental strand, 37186057 - 37185919
Alignment:
| Q |
231 |
aaaggtaaccttgaaaattcagcagagaggcattattacaacaattttgcagtacaactggacctgaatcataaaatatttttgacctgaaagagcaaca |
330 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
37186057 |
aaaggtaaccttgaaaattcagcagagaagcactattacaacaattttgcagttcaactcgacctgaatcataaaatatttttgacctgaaagagaaaca |
37185958 |
T |
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| Q |
331 |
cagataagacatttcattgtcattgaaaatgacctaaaa |
369 |
Q |
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| T |
37185957 |
aaaatgaggcagttcattgtcatggaaaatgatctaaaa |
37185919 |
T |
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