View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_low_19 (Length: 308)
Name: NF11464_low_19
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 45141897 - 45141609
Alignment:
| Q |
1 |
ctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacact |
100 |
Q |
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| T |
45141897 |
ctccaagctcaccacacgttgaacgtacaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagctacact |
45141798 |
T |
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| Q |
101 |
ggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141797 |
ggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtg |
45141698 |
T |
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| Q |
201 |
ttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttcc |
289 |
Q |
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| T |
45141697 |
ttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttcc |
45141609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 45152542 - 45152252
Alignment:
| Q |
1 |
ctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacact |
100 |
Q |
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|||||||||||| ||||||||| || ||||| |||| |||||||||||||| | ||||||||| || | | ||||||||| || |||| ||||| |
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| T |
45152542 |
ctccaagctcactgcacgttgagcgaacaaggcctataagaccatgtttggatgttgtataatcatgtcctgcacatccagcaacaaagccagccacact |
45152443 |
T |
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| Q |
101 |
ggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtg |
200 |
Q |
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| T |
45152442 |
agccgtgcaaattatggatccacgaatttttctttccaccataacacgcgcagcgtgcttgatagttgtagctgatccacgaacattaatggccatggtg |
45152343 |
T |
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| Q |
201 |
ttgtcaaattcattcagatcaaattctagtatgctgctagaca------taccaccttcaattccagcgttgctaaacataatgtctagggttcc |
289 |
Q |
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| T |
45152342 |
ttgtcaaattcatttacatca----ttagtatgctgatagacatagcagtagcacctccaattccagcattgctgaacatgatgtctaaggttcc |
45152252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 38256271 - 38256127
Alignment:
| Q |
91 |
cagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaat |
190 |
Q |
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||||||||||||| || |||||||| ||||| || |||||||| |||||||| | ||||| ||| |||||||||| ||| || ||||||| || | |
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| T |
38256271 |
cagctacactggctgtgcaaattattgatcctcgtatttttctttccaccattacacgtgaagcatgcttgatagttgcagctgcaccacgaatgttcac |
38256172 |
T |
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| Q |
191 |
ggccatggtgttgtcaaattcattcagatcaaattctagtatgct |
235 |
Q |
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||||||||||||||||||||||| || | ||||||||||||||| |
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| T |
38256171 |
agccatggtgttgtcaaattcatttaggttaaattctagtatgct |
38256127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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