View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_low_20 (Length: 295)
Name: NF11464_low_20
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 41558151 - 41557869
Alignment:
| Q |
3 |
aaaaactgaattgtttgattcatacaattttcaagaacaaaaatgttgatttactcccaacatattgtgaaggtctatgctggaacccaacaagaagaac |
102 |
Q |
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| T |
41558151 |
aaaaactgaattgtttgattcatacaattttcaagaacaaaaatgttgatttactcccaacatattgtgaaggtctatgctggaacccaacatgaagaac |
41558052 |
T |
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| Q |
103 |
caaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaacaaaaaatcactattatatgcatcatctctcaacctacccttcaa |
202 |
Q |
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| T |
41558051 |
caaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaataaaaaatcactattatatgcatcatttctcaacctacccttcaa |
41557952 |
T |
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| Q |
203 |
tttatctataatctgcttattcaatttcaaagacctaaacccatttcctatgtgcctagaatgccaatgtctgtatgtctctg |
285 |
Q |
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| T |
41557951 |
tttatctataatctgcttattcaatttcaaagacctaaacccatttcctatgtgcctagaatgccaatgcctgtatgtctctg |
41557869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 26 - 285
Target Start/End: Complemental strand, 41584258 - 41583998
Alignment:
| Q |
26 |
acaattttcaagaacaaaaatgttgatttactcccaacatattgtgaaggtctatgctggaacccaacaagaagaaccaaatagaattctacccttccaa |
125 |
Q |
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| T |
41584258 |
acaattttcaagaacgaaaatgttaatttactcccaacatgttgtgaaggtctatgctggaacccaacatgaagaaccaaatagaattctacccttccaa |
41584159 |
T |
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| Q |
126 |
ccttgtagcatccaattttcattcacctcaaacaaaaaatcactattatatgcatcatctctcaacctacccttcaatttatctataatctgcttattca |
225 |
Q |
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| T |
41584158 |
ccttgtagcatccaattttcattcacctcaaataaaaaatcactattatatgcatcatttctcaacctacccttcaatttatctataatctgcttattca |
41584059 |
T |
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| Q |
226 |
atttc-aaagacctaaacccatttcctatgtgcctagaatgccaatgtctgtatgtctctg |
285 |
Q |
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| T |
41584058 |
atttcaaaagacctaaacccatttactatgtgcctagaatgccaatgcctgtatgtctctg |
41583998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 285
Target Start/End: Complemental strand, 41571840 - 41571581
Alignment:
| Q |
26 |
acaattttcaagaacaaaaatgttgatttactcccaacatattgtgaaggtctatgctggaacccaacaagaagaaccaaatagaattctacccttccaa |
125 |
Q |
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| T |
41571840 |
acaattttcaagaacaaaaatgttagtttactcccaacatgttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaa |
41571741 |
T |
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| Q |
126 |
ccttgtagcatccaattttcattcacctcaaacaaaaaatcactattatatgcatcatctctcaacctacccttcaatttatctataatctgcttattca |
225 |
Q |
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| T |
41571740 |
ccttgtagcatccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatctataatctgcttatcca |
41571641 |
T |
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| Q |
226 |
atttcaaagacctaaacccatttcctatgtgcctagaatgccaatgtctgtatgtctctg |
285 |
Q |
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| T |
41571640 |
atttcaaagacttaaacccatttcccatgtgcctaaaatgccattgcctatatgtctctg |
41571581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 41590810 - 41590529
Alignment:
| Q |
3 |
aaaaactgaattgtttgattcatacaattttcaagaacaaaaatgttgatttactcccaacatattgtgaaggtctatgctggaacccaacaagaagaac |
102 |
Q |
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||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||| | ||||||||||||||| ||||| |||||||||||||| |
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| T |
41590810 |
aaaaactgaattgtttgattcatacaatta-caagcacagaaatgttaatttactcccacctagttgtgaaggtctatgttggaatccaacaagaagaac |
41590712 |
T |
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| Q |
103 |
caaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaacaaaaaatcactattatatgcatcatctctcaacctacccttcaa |
202 |
Q |
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| T |
41590711 |
caaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaa |
41590612 |
T |
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| Q |
203 |
tttatctataatctgcttattcaatttcaaagacctaaacccatttcctatgtgcctagaatgccaatgtctgtatgtctctg |
285 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
41590611 |
tttatttataatctgcttatccaatttcaaagacctaaacccatttcccatgtgcctagaatgccaatgcatatatgtctctg |
41590529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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