View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_low_22 (Length: 288)
Name: NF11464_low_22
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 35115394 - 35115646
Alignment:
| Q |
23 |
ttgcactcatcaatgctgaaaagaatcctgattttctagatgaggttgaaggtccatcccattctgatctgcgaattttcgcagatgctacggttgagta |
122 |
Q |
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| T |
35115394 |
ttgcactcatcaatgctgaaaagaatcctgattttctagatgaggttgaaggtccatcccattctgatctgcgaattttcgcagatgctacggttgagta |
35115493 |
T |
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| Q |
123 |
tccaagtcttaagaaaagaactttcttcattcccattagcttaacctcaaaccaagcctttgtcacaatagacgtagactcgtccattctggagctattg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35115494 |
tccaagtcttaagaaaagaactttcttcattcccattagcttaacctcaaaccaagcctttgtcacaatagacgtagactcgtccattctggagctattg |
35115593 |
T |
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| Q |
223 |
tattgtacaggtgctgtgtagacatgagaaaacatgctccacttcacaggttc |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35115594 |
tattgtacaggtgctgtgtagacatgagaaaacatgctccacttcactggttc |
35115646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 47984737 - 47984487
Alignment:
| Q |
23 |
ttgcactcatcaatgctgaaaagaatcctgattttctagatgaggttgaaggtccatcccattctgatctgcgaattttcgcagatgctacggttgagta |
122 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47984737 |
ttgcactcatcaatgctgaaaa--atccttattttctagatgaggttgaaggtccatcccattctgatctgcgaattttcgcagatgctacggttgagta |
47984640 |
T |
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| Q |
123 |
tccaagtcttaagaaaagaactttcttcattcccattagcttaacctcaaaccaagcctttgtcacaatagacgtagactcgtccattctggagctattg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
47984639 |
tccaagtcttaagaaaagaactttcttcattcccattaacttaacctcaaaccaagcctttgtcacaatagatgtagactagtccattctggagctattg |
47984540 |
T |
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| Q |
223 |
tattgtacaggtgctgtgtagacatgagaaaacatgctccacttcacaggttc |
275 |
Q |
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||| |||| ||||||||||||||||| |||||||||||| ||| || ||||| |
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| T |
47984539 |
tatcatacaagtgctgtgtagacatgataaaacatgctcctcttgactggttc |
47984487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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