View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11464_low_4 (Length: 446)
Name: NF11464_low_4
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 22972116 - 22972528
Alignment:
| Q |
18 |
gagcagagaggtgacgcaaagcttttgttgaaatgtatgcaattttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcatg |
117 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22972116 |
gagcaaagaggtgatgcaaagcttttgttgaaatgtatgcaatcttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcatg |
22972215 |
T |
|
| Q |
118 |
agttatttcaaggactacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtgg |
217 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22972216 |
agttatctcaagcactacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtgg |
22972315 |
T |
|
| Q |
218 |
ttgggattctttgctcgatgaagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22972316 |
ttgggattctttgctcgatgaagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaaa |
22972415 |
T |
|
| Q |
318 |
cgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttcag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22972416 |
cgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttcag |
22972515 |
T |
|
| Q |
418 |
aagtgaatactga |
430 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22972516 |
aagtgaatactga |
22972528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 22963872 - 22964284
Alignment:
| Q |
18 |
gagcagagaggtgacgcaaagcttttgttgaaatgtatgcaattttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcatg |
117 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22963872 |
gagcaaagaggtgaagcaaagcttttgttgaaatgtatgcaatcttttgaatttattttcatcttgcactagatgaaaaaagttttgtcaattactcatg |
22963971 |
T |
|
| Q |
118 |
agttatttcaaggactacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtgg |
217 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22963972 |
agttatctcaagcaatacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtgg |
22964071 |
T |
|
| Q |
218 |
ttgggattctttgctcgatgaagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaaa |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22964072 |
ttgggattctttgctagatgaagtttcattattttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaaa |
22964171 |
T |
|
| Q |
318 |
cgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttcag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22964172 |
cgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttcag |
22964271 |
T |
|
| Q |
418 |
aagtgaatactga |
430 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22964272 |
aagtgaatactga |
22964284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 25274251 - 25274080
Alignment:
| Q |
33 |
gcaaagcttttgttgaaatgtatgcaattttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcatgagttatttcaaggac |
132 |
Q |
| |
|
|||| ||||||| |||||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||| | || | |
|
|
| T |
25274251 |
gcaatgcttttgatgaaatatatgcaatcttttgaatttattttcatcttacacttgatgaaaaatgttttgccaattactcataagttatcttaaccat |
25274152 |
T |
|
| Q |
133 |
tacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaacta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
25274151 |
tacaaagaagtgatcaagatattgttaatgtcatgaaaatagtcaaaatgtcaaaacaaaaggaacaaacta |
25274080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 25273821 - 25273725
Alignment:
| Q |
203 |
tataagggatagtggttgggattctttgctcgatgaagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaa |
299 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||||||||||| ||||| ||||| |||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
25273821 |
tataaggtatagtggttgagattctttgctccatgaagtttcattattttgcgaacaacatgaagttgtcgtttcaaatatggatgatacctttcaa |
25273725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 25273731 - 25273683
Alignment:
| Q |
350 |
ctttcaagttcaattcttctatcaagtgattgatcgacaacttcaagag |
398 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
25273731 |
ctttcaagttcaattgttctatcaagtgattgatcgacaactttaagag |
25273683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 24 - 430
Target Start/End: Complemental strand, 49601572 - 49601166
Alignment:
| Q |
24 |
agaggtgacgcaaagcttttgttgaaatgtatgcaattttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcatgagttat |
123 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49601572 |
agaggtgacacaaagcttttgttgaaatgtatgcaatcttttgaatttattttcatcttgcactagatgaaaaaagttttgtcaattactcatgagttat |
49601473 |
T |
|
| Q |
124 |
ttcaaggactacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtggttggga |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
49601472 |
ctcaagcactacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttaaaaactataagggatagtggttgaga |
49601373 |
T |
|
| Q |
224 |
ttctttgctcgatgaagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaaacgcaac |
323 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49601372 |
ttcttcgctcgatgaagtttcattgttttgtgaacatcatgaagttgtcatcccagatatggatgatacctatcaaacatttaaaaagtcaaaacgcaac |
49601273 |
T |
|
| Q |
324 |
tcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttcagaagtga |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49601272 |
tcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgttcttcagaagtga |
49601173 |
T |
|
| Q |
424 |
atactga |
430 |
Q |
| |
|
||||||| |
|
|
| T |
49601172 |
atactga |
49601166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 12586542 - 12586129
Alignment:
| Q |
17 |
ggagcagagaggtgacgcaaagcttttgttgaaatgtatgcaattttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcat |
116 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12586542 |
ggagcaaagaggtgacgcaaatctttttttgaaatgtatgcaatcttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcat |
12586443 |
T |
|
| Q |
117 |
gagttatttcaaggactacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtg |
216 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12586442 |
gagttatctcaagcattacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtg |
12586343 |
T |
|
| Q |
217 |
gttgggattctttgctcgatgaagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaa |
316 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12586342 |
gttgggattctttgttttatgaagtttcatttttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaa |
12586243 |
T |
|
| Q |
317 |
acgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12586242 |
acgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcatttttca |
12586143 |
T |
|
| Q |
417 |
gaagtgaatactga |
430 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12586142 |
gaagtgaatactga |
12586129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 238 - 386
Target Start/End: Complemental strand, 26572262 - 26572110
Alignment:
| Q |
238 |
aagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaaacgcaactcagagaaagtttc |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||| |
|
|
| T |
26572262 |
aagtttcattgttttgtgaacatcatgaagttgtcattccaaatatggatgatacctatcaaacatttaaaaagtcaaagcacaactcggagaaattttc |
26572163 |
T |
|
| Q |
338 |
----taacttacattactttcaagttcaattcttctatcaagtgattgatcga |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26572162 |
taattaacttacattactttcaagttcaattcttctatcaagtgattgatcga |
26572110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 32500507 - 32500560
Alignment:
| Q |
354 |
caagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataat |
407 |
Q |
| |
|
||||||||||| |||||||||||| |||||| | ||||||||||||| |||||| |
|
|
| T |
32500507 |
caagttcaattgttctatcaagtggttgatcaaaaacttcaagagttcaataat |
32500560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 33 - 430
Target Start/End: Complemental strand, 22319354 - 22318956
Alignment:
| Q |
33 |
gcaaagcttttgttgaaatgtatgcaattttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcatgagttatttcaaggac |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||| | |
|
|
| T |
22319354 |
gcaaagcttttgttgaaatgtatgcaatcttttgaatttattttcatcttgagcttaatgaaaaaagttttgtcaattactcataagttatctcaagcat |
22319255 |
T |
|
| Q |
133 |
tacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtggttgggattctttgct |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22319254 |
tacaaagaagtgatcaagatattgttaatgtcatgaaattagtcaaaatgtccaaacagaagttacaaactataagggatagtggttgggattctttgct |
22319155 |
T |
|
| Q |
233 |
cga-tgaagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgatacctatcaaacatttaaaaagtcaaaacgcaactcagagaa |
331 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
22319154 |
caaatgaagtttcattgttttgtgaacatcatgaagttgtcatcccaaatatggatgataccaatcaaacatttgaaaagtcaaagcgcaactcggagaa |
22319055 |
T |
|
| Q |
332 |
agtttctaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataatcgtttttcagaagtgaatactga |
430 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22319054 |
agtttttaacttacattactttcaagttcaattcttctatcaagtgattgatcgacaacttgaagagttaaataatcgtttttcagaagtgaatactga |
22318956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 7592875 - 7592822
Alignment:
| Q |
354 |
caagttcaattcttctatcaagtgattgatcgacaacttcaagagttgaataat |
407 |
Q |
| |
|
||||||||||| |||||||| ||| |||||| | ||||||||||||| |||||| |
|
|
| T |
7592875 |
caagttcaattgttctatcatgtggttgatcaaaaacttcaagagttcaataat |
7592822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 29095008 - 29095237
Alignment:
| Q |
26 |
aggtgacgcaaagcttttgttgaaatgtatgcaattttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcatgagttattt |
125 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
29095008 |
aggtgaagcaatgcttttgttgaaatgtatacaattttttgaatttatttttatcttgcacttgatgaatttt-ttttgtcaattactcatgagttatct |
29095106 |
T |
|
| Q |
126 |
caaggactacaaagaagtgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtggttgggatt |
225 |
Q |
| |
|
||| | |||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29095107 |
caaacattacaaaaaagtgatcaagatattgttgataccatgaaattagtcaaaatgtcaaaacaaaaggaacaaactataagggatagtggttgggatt |
29095206 |
T |
|
| Q |
226 |
ctttgctcgatgaagtttcattgttttgtga |
256 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |
|
|
| T |
29095207 |
ctttgctcgatgtagtttcattattttgtga |
29095237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 29095769 - 29095809
Alignment:
| Q |
352 |
ttcaagttcaattcttctatcaagtgattgatcgacaactt |
392 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29095769 |
ttcaagttcaattgttctatcaagtgattgatcgacaactt |
29095809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 29095723 - 29095767
Alignment:
| Q |
249 |
ttttgtgaacatcatgaagttgtcatcccaaatatggatgatacc |
293 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
29095723 |
ttttgtgaacatcatgaagttgtcgtgctgaatatggatgatacc |
29095767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 43 - 256
Target Start/End: Original strand, 6495499 - 6495699
Alignment:
| Q |
43 |
tgttgaaatgtatgcaattttttgaatttattttcatcttgcacttgatgaaaaaagttttgtcaattactcatgagttatttcaaggactacaaagaag |
142 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| | ||| | |||||||||| |
|
|
| T |
6495499 |
tgttgaaatgtatgtaattttttaaatttattttcatcttgcacttgataaaaatagttttgtcaattaccaatgagttatcttaagcattacaaagaag |
6495598 |
T |
|
| Q |
143 |
tgatcaagatattgttaatgccatgaaattagtcaaaatgtccaaacaaaagttacaaactataagggatagtggttgggattctttgctcgatgaagtt |
242 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6495599 |
tgatcaagatattattaatgtcatgaaatcagtgaaaatgtc-------------caaactataagggatagtggttgggattctttggtccatgaagtt |
6495685 |
T |
|
| Q |
243 |
tcattgttttgtga |
256 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
6495686 |
tcattattttgtga |
6495699 |
T |
|
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