View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_low_8 (Length: 414)
Name: NF11464_low_8
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 5576869 - 5576479
Alignment:
| Q |
17 |
gtagcttcattagttttcctgcttagatggcatgtgagatcaaaacatggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576869 |
gtagcttcattagttttcctgcttagatggcatgtgagatcaaaacatggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgt |
5576770 |
T |
|
| Q |
117 |
caatggaaaatcccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattac |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576769 |
caatggaaaatcccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattac |
5576670 |
T |
|
| Q |
217 |
aaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatcta |
316 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576669 |
aaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatcta |
5576570 |
T |
|
| Q |
317 |
tattatgattatgaaatctgattctctcnnnnnnnnngtaagagtaaactatactgattgaatctataagtgtttttcattattcttctctct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5576569 |
tattatgattatgaaatctgattctctc--tttttttgtaagagtaaactatactgattgaatctataagtgtttttcattattcttttctct |
5576479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 63 - 301
Target Start/End: Complemental strand, 5587192 - 5586954
Alignment:
| Q |
63 |
atggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattct |
162 |
Q |
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||||||| | ||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||| ||| |
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| T |
5587192 |
atggttggtagttcttattgttttcttttctgcaaactatttgcaacaatgtgtcaatgggaaatcccaagtgccttgtctatttatctttggagactct |
5587093 |
T |
|
| Q |
163 |
ttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgggcccaaccggaagattta |
262 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||| |
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| T |
5587092 |
ttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaagattta |
5586993 |
T |
|
| Q |
263 |
ccaacggtcgaacttcaattgacataataagtagcattc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
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| T |
5586992 |
ccaacggtcgaacttcaattgacataatcagtaacattc |
5586954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 55 - 322
Target Start/End: Complemental strand, 5573669 - 5573403
Alignment:
| Q |
55 |
atcaaaacatggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttg |
154 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||| |||||||||||||| |||||| ||||||||| ||||| |||||||| ||| | |||||||||| |
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| T |
5573669 |
atcaaaacatggttggtggttcttattgttttcttgtctgcaaactattttaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttg |
5573570 |
T |
|
| Q |
155 |
gagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgggcccaaccgg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
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|
| T |
5573569 |
gagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccgg |
5573470 |
T |
|
| Q |
255 |
aagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattat |
322 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |||| | |||||||| ||||||||| |
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|
| T |
5573469 |
aagatttaccaacggtagaactgcaattgacataataagtaacatt-ctttcaacttggctatattat |
5573403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 62 - 324
Target Start/End: Complemental strand, 5593429 - 5593165
Alignment:
| Q |
62 |
catggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattc |
161 |
Q |
| |
|
|||||||| || ||| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||| |
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|
| T |
5593429 |
catggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattc |
5593330 |
T |
|
| Q |
162 |
tttatctgatagtggaaacaataacaaccttcccac---ctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgggcccaaccggaaga |
258 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| | |||| ||| ||| |||||||| ||||| || |||||||||||||||||||||||||||||| |
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|
| T |
5593329 |
tttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaaga |
5593230 |
T |
|
| Q |
259 |
tttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga |
324 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| | || |||||||| ||||||||| |
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|
| T |
5593229 |
tttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga |
5593165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 295
Target Start/End: Original strand, 12051689 - 12051934
Alignment:
| Q |
54 |
gatcaaaacatggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatcttt |
153 |
Q |
| |
|
|||||| ||||||||| || | ||||||||| || | || ||||||||||| ||||| |||| ||| |||| ||||| || |||| ||||||||| |
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| T |
12051689 |
gatcaagacatggttggtgatgcttattcttttcatgtccgcaaactatttacaacacagtgtctatgagaaatatcaagtacctagtctgtttatcttt |
12051788 |
T |
|
| Q |
154 |
ggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcga---cttcc-cgatgggccca |
249 |
Q |
| |
|
|| || ||||||| |||||||| |||||| || |||||||| |||| ||| ||| | |||||||||||||||||||||| ||||| || | ||| || |
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|
| T |
12051789 |
ggggactctttatatgatagtgaaaacaacaataaccttcctacctttgcttaatttgattacaaaccttatggaatcgattccttcctcgctcggcgca |
12051888 |
T |
|
| Q |
250 |
accggaagatttaccaacggtcgaacttcaattgacataataagta |
295 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
12051889 |
accagaagatttaccaacggtcgaactgcaattaacataataagta |
12051934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 5582938 - 5582835
Alignment:
| Q |
61 |
acatggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagatt |
160 |
Q |
| |
|
||||||||| || ||| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||| || |||||||||||||||||||||| |
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|
| T |
5582938 |
acatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagatt |
5582839 |
T |
|
| Q |
161 |
cttt |
164 |
Q |
| |
|
|||| |
|
|
| T |
5582838 |
cttt |
5582835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 12064683 - 12064772
Alignment:
| Q |
212 |
attacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattc |
301 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattc |
12064772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 12059272 - 12059381
Alignment:
| Q |
212 |
attacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaactt |
311 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| | || || ||||||||||||| ||||||||| |||||||||||||||||| |||| | ||||| || |
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|
| T |
12059272 |
attagaaaccttatggaatcgactccccgatcagtgcagccagaagatttaccaatggtcgaactgcaattgacataataagtaacatt-ctttcaattt |
12059370 |
T |
|
| Q |
312 |
atctatattat |
322 |
Q |
| |
|
| ||||||||| |
|
|
| T |
12059371 |
aactatattat |
12059381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 5582793 - 5582733
Alignment:
| Q |
264 |
caacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga |
324 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || | | ||||| ||||||||||||||| |
|
|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatga |
5582733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 295
Target Start/End: Complemental strand, 36358051 - 36357884
Alignment:
| Q |
128 |
cccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatgg |
227 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||| || ||||||||||| || ||||| | ||| ||| ||| |||||||| |||||||| |
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|
| T |
36358051 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgg |
36357952 |
T |
|
| Q |
228 |
aatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagta |
295 |
Q |
| |
|
|| || || || || || ||||||||||||||||| || || ||||||||||||||||| |||| |
|
|
| T |
36357951 |
gattgattttccagctggtcctaccggaagatttaccaatggccgtacttcaattgacataatcagta |
36357884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 290
Target Start/End: Complemental strand, 7017710 - 7017550
Alignment:
| Q |
130 |
caagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaa |
229 |
Q |
| |
|
|||||||| ||||||||| | ||||| || ||||||||||| ||||||||||| || | ||| || |||||||| |||||||||||| ||||| | |
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| T |
7017710 |
caagtgccttgtctttttgtttttggtgactctttatctgacagtggaaacaacaatgatcttgttacaactgcaaaagttaattacaaaccatatggca |
7017611 |
T |
|
| Q |
230 |
tcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataat |
290 |
Q |
| |
|
|||| || |||| || ||||| ||||| ||||| || || ||| |||||||||||||| |
|
|
| T |
7017610 |
tcgattttccgacaggtccaacaggaaggtttactaatggattaacatcaattgacataat |
7017550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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