View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11464_low_9 (Length: 413)
Name: NF11464_low_9
Description: NF11464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11464_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 49753547 - 49753165
Alignment:
| Q |
16 |
cacagaagctatatcggagctactgagtccactcggtcttcttcttctaccaatcatccttcttctcacgattcagtttctctcctctgaacgtggatct |
115 |
Q |
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| T |
49753547 |
cacagaagctatatcggagctactgagtccactcggtcttcttcttctaccaatcatccttcttctcacgattcagtttctctcctctgaacgtggatct |
49753448 |
T |
|
| Q |
116 |
ttcgtctccgccattttctccaccggtgaacctgatactattcatcgtgttagtggatcaccgttcggtgttgctctattccttgttctcattcttgtgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753447 |
ttcgtctccgccattttctccaccggtgaacctgatactattcatcgtgttagtggatcaccgttcggtgttgctctattccttgttctcattcttgtgc |
49753348 |
T |
|
| Q |
216 |
ttttgtataaccgtttttcgatcttcggtggtgatgattcagatgactgaaaacaactctacttgttttctttttctagtttctagatctgactttaagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753347 |
ttttgtataaccgtttttcgatcttcggtggtgatgattcagatgactgaaaacaactctacttgttttctttttctagtttctagatctgactttaagc |
49753248 |
T |
|
| Q |
316 |
tttatttatttctgaaagcgcactattctatatgttatcagttattgaagtatgaaaatggaatttggtgttacattattagt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753247 |
tttatttatttctgaaagcgcactattctatatgttatcagttattgaagtatgaaaatggaatttggtgttacattattagt |
49753165 |
T |
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