View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_high_11 (Length: 327)
Name: NF11465_high_11
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 43111684 - 43111369
Alignment:
| Q |
1 |
ttaacatttagtcttgccctttgtttttctgcagactggggtcatttctgatgatgaattgcttgatttgctggacctgtctttgtcatccgacacttca |
100 |
Q |
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| T |
43111684 |
ttaacatttagtcttgccctttgtttttctgcagactggggtcatttctgatgatgaattgcttgatttgctggacctgtctttgtcatccgacacttca |
43111585 |
T |
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| Q |
101 |
aatacggttataagagcccgggagctgttgagatcaaggatagatcctttacaacttatatctcagttagcgaatcttattatggacattcttgcaggga |
200 |
Q |
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| T |
43111584 |
aatacggttataagagcccgggagctgttgagatcaaggatagatcctttacaacttatatctcagctagcgaatcttattatggacattcttgcaggga |
43111485 |
T |
|
| Q |
201 |
agtgtgaacttactggttcggaaatcagaagaagattttctgatagacatatttgtaagggcttttaaataccttatcatggacatgtttgaatatatgg |
300 |
Q |
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| T |
43111484 |
agtgtgaacttactggttctgaaatcagaagaagattttctgatagacatatttgtaagggcttttaaataccttatcatggacatgtttgtatatatgg |
43111385 |
T |
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| Q |
301 |
gctattggactttcat |
316 |
Q |
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| T |
43111384 |
gctattagactttcat |
43111369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 34259533 - 34259345
Alignment:
| Q |
13 |
cttgccctttgtttttctgcagactggggtcatttctgatgatgaattgcttgatttgctggacctgtctttgtcatccgacacttcaaatacggttata |
112 |
Q |
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|||| |||||||| || ||||||||||| | |||| || |||||||||||||||||||| || ||| |||||||| | ||||| |||||||| |||||| |
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| T |
34259533 |
cttgtcctttgttgttatgcagactgggattgtttcagacgatgaattgcttgatttgcttgatctggctttgtcacctgacacatcaaatactgttata |
34259434 |
T |
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| Q |
113 |
agagcccgggagctgttgagatcaaggatagatcctttacaacttatatctcagttagcgaatcttattatggacattcttgcagggaa |
201 |
Q |
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||||| || |||||| ||||||||||||| |||||||| |||||| | || ||||| | |||||| || |||||||| ||||| ||||| |
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| T |
34259433 |
agagctcgcgagctgatgagatcaaggatcgatcctttgcaacttgtgtcacagttggtgaatctcataatggacatccttgctgggaa |
34259345 |
T |
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