View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_high_17 (Length: 252)
Name: NF11465_high_17
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 39783592 - 39783815
Alignment:
| Q |
19 |
acctcctgcttaaaactctttcggcgacccttaaatcaccaaccgagctacctacagtacatacttgttaaaacaaatgcaaattaaacgtcttatttgc |
118 |
Q |
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| T |
39783592 |
acctcctgcttaaaactctttcggcgacccttaaatcaccaaccgagctacctacattacatacttgttaaaacaaatgaaaattaaacgtcttatttgc |
39783691 |
T |
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| Q |
119 |
atatagaaatgtatcttgcattacatcttgaattgttcacccaatatagatattttcttatatcaaaaaatgattattcattttatgtatttccagctgt |
218 |
Q |
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| T |
39783692 |
atatagaaatgtatcttgcattacatcttgaattgttcacccaatatagatattttcttatatcaaaaaatgattattcattttatgtatttccagctgt |
39783791 |
T |
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| Q |
219 |
agacaatgactggaatttcctttg |
242 |
Q |
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| T |
39783792 |
agacaatgactggaatttcctttg |
39783815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 39794724 - 39794849
Alignment:
| Q |
76 |
tacatacttgttaaaacaaatgcaaattaaacgtcttatttgcatatagaaatgtatcttgcattacatcttgaattgttcacccaa-tatagatatttt |
174 |
Q |
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| T |
39794724 |
tacatgcttgttaaaacaaatgcaaattaaatttcttatttgcatatatta-tgtatcttgcattacatctggaatatttcaccccagtatggatatttt |
39794822 |
T |
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| Q |
175 |
cttatatcaaaaaatgattattcattttatg |
205 |
Q |
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| T |
39794823 |
cttcta----agaatgattattcattttatg |
39794849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 39790131 - 39790251
Alignment:
| Q |
84 |
tgttaaaacaaatgcaaattaaacgtcttatttgcatatagaaatgtatcttgcattacatcttgaattgttcacccaatatagatattttcttatatca |
183 |
Q |
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| T |
39790131 |
tgttaaaatgaatgctaattaaatttcttatttgcttatagaa-tctatcttacatttcatctggaattgttcatacagtatagatatcttattctatca |
39790229 |
T |
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| Q |
184 |
aaaaatgattattcattttatg |
205 |
Q |
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| T |
39790230 |
aaggatggttgttcattttatg |
39790251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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