View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_high_19 (Length: 249)
Name: NF11465_high_19
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 43281221 - 43281470
Alignment:
| Q |
11 |
cacagacttagtatttcgaagcccctgcaactatatgcaggaagcatgtgagaaagagcatggaattcttccacacacacatgatacacaattaattaat |
110 |
Q |
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| T |
43281221 |
cacagacttagtatttcgaagcccctgcaactatatgcaggaagcatgtgagaaagagcatggaattcttccacacacacatgatacacaattaattaat |
43281320 |
T |
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| Q |
111 |
attgattgtatattctactccgactcaaataatatactataaaaatggatcaacaaaatttgatatatttaggagaaaatgttagtagaaaat------- |
203 |
Q |
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| T |
43281321 |
attgattgtatattctactccgtctcaaataatatactataaaaatggatcaacaaaagttgatgtatttaggagaaaatgttagtagcaaattagcatg |
43281420 |
T |
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| Q |
204 |
gtta-------gtaatcatattaacataattaatccattgtcaacagaca |
246 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43281421 |
gttactccatggtaatcatattaacataattaatccattgtcaacagaca |
43281470 |
T |
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