View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11465_high_2 (Length: 696)

Name: NF11465_high_2
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11465_high_2
NF11465_high_2
[»] chr3 (10 HSPs)
chr3 (18-691)||(46496559-46497230)
chr3 (199-413)||(55425518-55425733)
chr3 (199-403)||(31280967-31281172)
chr3 (290-402)||(46495493-46495606)
chr3 (312-402)||(21515260-21515350)
chr3 (199-298)||(17345411-17345510)
chr3 (357-403)||(31282610-31282656)
chr3 (336-402)||(17029658-17029724)
chr3 (357-403)||(55423391-55423437)
chr3 (346-398)||(30155755-30155807)
[»] chr1 (8 HSPs)
chr1 (170-400)||(13875104-13875334)
chr1 (19-150)||(13875594-13875725)
chr1 (223-297)||(51217720-51217794)
chr1 (338-403)||(43356938-43357003)
chr1 (332-400)||(43356839-43356907)
chr1 (222-297)||(34654279-34654354)
chr1 (225-279)||(26055017-26055071)
chr1 (199-257)||(36511247-36511305)
[»] chr4 (6 HSPs)
chr4 (199-403)||(28655568-28655773)
chr4 (199-279)||(11242855-11242935)
chr4 (332-404)||(11243801-11243873)
chr4 (357-404)||(28657221-28657268)
chr4 (199-257)||(34439576-34439634)
chr4 (318-405)||(20825432-20825519)
[»] chr8 (3 HSPs)
chr8 (199-400)||(42837554-42837757)
chr8 (231-298)||(16362520-16362587)
chr8 (223-298)||(40251296-40251371)
[»] chr7 (2 HSPs)
chr7 (231-401)||(29861496-29861667)
chr7 (309-381)||(44553219-44553292)
[»] chr2 (4 HSPs)
chr2 (231-298)||(6707027-6707094)
chr2 (332-404)||(2717829-2717901)
chr2 (222-298)||(26205986-26206062)
chr2 (355-403)||(28545025-28545073)
[»] scaffold0176 (1 HSPs)
scaffold0176 (332-402)||(16038-16108)
[»] chr5 (3 HSPs)
chr5 (337-403)||(39881614-39881680)
chr5 (231-298)||(1273190-1273257)
chr5 (235-300)||(10736887-10736952)
[»] scaffold0148 (1 HSPs)
scaffold0148 (200-288)||(15766-15854)


Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 691
Target Start/End: Original strand, 46496559 - 46497230
Alignment:
Q  18 gaatcaatttgggaaatattttgtttttcttcttctatgtataatgaattaggggaaaattgtgtgagtaaaatactggattatttaccgctcatgatgg 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  46496559 gaatcaatttgggaaatattttgtttttcttcttctgtgtataatgaattaggggaaaattgtgtgagtaaaaaactggattatttaccgctcaagatgg 46496658  T
Q  118 tggaggcgattgtggctatggcggtggttgtgagcctgtcgatttgatgagggaagatgatgaagaaaaataaannnnnnnggtgttggtggtttatcgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||  ||    
T  46496659 tggaggcgattgtggctatggcggtggttgtgagcctgtcgatttgatgagggaagatgatgaagaaaaataaaaatttttggtgttggtggtttactgt 46496758  T
Q  218 tacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaattaactaacaggatgtaca 317  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46496759 tacatacaatagtcctgcaatctaatggttgaaatcatatctaagatattaggcattaaaaagttaacggagtggaccaaattaactaacgggatgtaca 46496858  T
Q  318 tgagggaccaaattgaaattttt-aaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagccttatttctaatatg 416  Q
    ||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  46496859 tgagggaccaaattgaaattttttaaagttaagggaccaaatcgaaaacaacaaataagttgagggaccatttatgtaattaagccttatttctagtatg 46496958  T
Q  417 atgtcatcaaccaccatgtcaacgtataattggccggctattatccttgccatttttggagttgggagcataattttcaccaaattgctgacaaaaattg 516  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46496959 atgtcatcaaccaccatgtcaacatataattggctggctattatccttgccatttttggagttgggagcataattttcaccaaattgctgacaaaaattg 46497058  T
Q  517 atagcaccgacctatactactaatattaatttggcgagatctannnnnnnnnnnnngaattaaatactagaagctcctaaaattaggtcttgggtagttt 616  Q
    ||||||||||||||||||| ||||||||   ||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||    
T  46497059 atagcaccgacctatactattaatatta---tggcgagatctatttttatttttttgaattaaatactagaagctcctaaaattaggtcttgggtagttt 46497155  T
Q  617 cgtcttctatttttcttgcaagaatgaggttctctcgcaaaacaatcgccattgccaaagttgttctctgcttct 691  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46497156 cgtcttctttttttcttgcaagaatgaggttctctcgcaaaacaatcgccattgccaaagttgttctctgcttct 46497230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 199 - 413
Target Start/End: Original strand, 55425518 - 55425733
Alignment:
Q  199 ggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    ||||||||||||| | |||||| |||||| ||| ||||||||||||| ||||||||||| ||||||||| | |||||||||  ||||||||||||||||     
T  55425518 ggtgttggtggttcaccgttacatacaatggtcttgcaatctaatggctgaaatcatatttaagatattagacattaaaaaactaacggagtggaccaac 55425617  T
Q  299 ttaactaacag-gatgtacatgagggaccaaattg-aaatttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaat 396  Q
    | ||||||||| | |||||||||||||||||| || |||  |||| |  |||| ||| | ||||||||||||||||||||||||| |||| |||||||||    
T  55425618 t-aactaacagaggtgtacatgagggaccaaaatggaaaagtttagaattaagggaccatatcgaaaacaacaaataagttgagggaccatttatgtaat 55425716  T
Q  397 taagccttatttctaat 413  Q
    |||||| ||||| ||||    
T  55425717 taagccatatttttaat 55425733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 199 - 403
Target Start/End: Complemental strand, 31281172 - 31280967
Alignment:
Q  199 ggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    ||||||||||||| | |||||| |||||| ||| ||||||||||||| ||||||||||| ||||||||| | |||||||||  ||||||||||||||||     
T  31281172 ggtgttggtggttcaccgttacatacaatggtcttgcaatctaatggctgaaatcatatttaagatattagacattaaaaaactaacggagtggaccaac 31281073  T
Q  299 ttaactaacag-gatgtacatgagggaccaaattg-aaatttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaat 396  Q
    | ||||||||| | |||||||||||||||||| || |||  |||| |  |||| ||| | ||||||||||||||||||||||||| |||| |||||||||    
T  31281072 t-aactaacagaggtgtacatgagggaccaaaatggaaaagtttagaattaagggaccatatcgaaaacaacaaataagttgagggaccatttatgtaat 31280974  T
Q  397 taagcct 403  Q
    |||||||    
T  31280973 taagcct 31280967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 46495606 - 46495493
Alignment:
Q  290 tggaccaaattaactaacaggatgtacatgagggaccaaattgaaatt-tttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaat 388  Q
    |||| ||||||||||||| ||||||||||||||||||||||| |||   ||||||| |||| ||| ||||||||||||||||||||||||||| || | |    
T  46495606 tggatcaaattaactaacgggatgtacatgagggaccaaattaaaaaaatttaaagttaagggaccaaatcgaaaacaacaaataagttgagggacaatt 46495507  T
Q  389 tatgtaattaagcc 402  Q
    ||||||||||||||    
T  46495506 tatgtaattaagcc 46495493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 21515350 - 21515260
Alignment:
Q  312 tgtacatgagggaccaaattgaaatttttaa-aggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcc 402  Q
    ||||||||||||||||||  ||||||||| | || |||| ||| ||||||||||||||||||||||| ||| | || |||||||||||||||    
T  21515350 tgtacatgagggaccaaacggaaattttttagagttaag-gaccaaatcgaaaacaacaaataagttaagggatcatttatgtaattaagcc 21515260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 17345510 - 17345411
Alignment:
Q  199 ggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    |||||||||||||||| |||   |||||||| | ||||||| ||||||| |||||||||  || ||||| | |||||||||  |||||||| ||||||||    
T  17345510 ggtgttggtggtttattgttgtatacaatagacatgcaatcgaatggttcaaatcatattaaaaatattagacattaaaaaactaacggagaggaccaaa 17345411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 31282610 - 31282656
Alignment:
Q  357 atcgaaaacaacaaataagttgaggaaccaattatgtaattaagcct 403  Q
    ||||||||||||||||||||||||| |||| |||| |||||||||||    
T  31282610 atcgaaaacaacaaataagttgagggaccatttatataattaagcct 31282656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 17029724 - 17029658
Alignment:
Q  336 tttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcc 402  Q
    ||||||||  |||| ||| |||||||||| ||||||||||||  || |||| |||||||||||||||    
T  17029724 tttttaaaattaagggaccaaatcgaaaagaacaaataagttatgggaccatttatgtaattaagcc 17029658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 55423437 - 55423391
Alignment:
Q  357 atcgaaaacaacaaataagttgaggaaccaattatgtaattaagcct 403  Q
    ||||||||||||||||||||||||  |||| |||| |||||||||||    
T  55423437 atcgaaaacaacaaataagttgagtgaccatttatataattaagcct 55423391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 30155807 - 30155755
Alignment:
Q  346 taagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaatta 398  Q
    |||||||||||||| ||||||||||||||||| | | |||| |||| ||||||    
T  30155807 taagagactaaatcaaaaacaacaaataagttaaaggaccatttatataatta 30155755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 170 - 400
Target Start/End: Complemental strand, 13875334 - 13875104
Alignment:
Q  170 gaagatgatgaagaaaaataaannnnnnnggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttg 269  Q
    |||||||||||||||||| |||       ||||||||||||||| |||||| || |||||||||||| |||||||||||||||||||||||||||||| |    
T  13875334 gaagatgatgaagaaaaacaaaaaaatttggtgttggtggtttaccgttacatataatagtcctgca-tctaatggttgaaatcatatctaagatattag 13875236  T
Q  270 gcattaaaaagttaacggagtggaccaaattaactaacaggatgtacatgagggaccaaatt-gaaatttttaaaggtaagagactaaatcgaaaacaac 368  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |||| |||||||| |||| ||  ||||||||||||||    
T  13875235 gcattaaaaagttaacggagtgaaccaaattaactaacgggatgtacatgagggatcaaattggaaaattttaaagttaagggatcaaatcgaaaacaac 13875136  T
Q  369 aaataagttgaggaaccaattatgtaattaag 400  Q
    ||||||||||||| |||| |||| ||||||||    
T  13875135 aaataagttgagggaccatttatataattaag 13875104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 13875725 - 13875594
Alignment:
Q  19 aatcaatttgggaaatattttgtttttcttcttctatgtataatgaattaggggaaaattgtgtgagtaaaatactggattatttaccgctcatgatggt 118  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  13875725 aatcaatttgggaaatattttgtttttcttcttcggtgtataatgaattgggggaaaattgtgtgagtaaaaaactggattatttaccgctcaagatggt 13875626  T
Q  119 ggaggcgattgtggctatggcggtggttgtga 150  Q
    ||||||||||||||||||||||||||||||||    
T  13875625 ggaggcgattgtggctatggcggtggttgtga 13875594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 51217794 - 51217720
Alignment:
Q  223 acaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaa 297  Q
    ||||||| | |||||||||||||||||||| ||||| || ||||| | |||||||||  |||||||| |||||||    
T  51217794 acaatagacatgcaatctaatggttgaaattatatcaaaaatattagtcattaaaaaactaacggagaggaccaa 51217720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 43356938 - 43357003
Alignment:
Q  338 tttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcct 403  Q
    ||||||| |||| ||| ||||| ||||||||||||||||||||| || | |||| |||||||||||    
T  43356938 tttaaagttaagggaccaaatcaaaaacaacaaataagttgagggacgatttatataattaagcct 43357003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 43356907 - 43356839
Alignment:
Q  332 gaaatttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaag 400  Q
    |||| ||||| || |||| ||| |||| |||||||||||||||||||| | |||| |||||||||||||    
T  43356907 gaaaattttagagttaagggaccaaattgaaaacaacaaataagttgaaggaccatttatgtaattaag 43356839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 34654279 - 34654354
Alignment:
Q  222 tacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaa 297  Q
    |||||| | ||||||||| |||||||||||||||||  || ||||| | |||| |||| ||||||||| |||||||    
T  34654279 tacaatggacctgcaatcgaatggttgaaatcatattaaaaatattagtcatttaaaaattaacggagaggaccaa 34654354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 26055071 - 26055017
Alignment:
Q  225 aatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaa 279  Q
    ||||| |||||||||||||||||||||| |||||  | ||||||| |||||||||    
T  26055071 aatagacctgcaatctaatggttgaaattatatcataaatatttgacattaaaaa 26055017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 36511247 - 36511305
Alignment:
Q  199 ggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatat 257  Q
    ||||||||||||| | |||||| |||||| ||| | ||||||||||| |||||||||||    
T  36511247 ggtgttggtggttcaccgttacatacaatggtcattcaatctaatggctgaaatcatat 36511305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 199 - 403
Target Start/End: Complemental strand, 28655773 - 28655568
Alignment:
Q  199 ggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    ||||||||||||| | |||||| |||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||||     
T  28655773 ggtgttggtggttcaccgttacatacaatggtcttgcaatctaatggctgaaatcatatctaagatattaggcattaaaaaactaacggagtggaccaac 28655674  T
Q  299 ttaactaacag-gatgtacatgagggaccaaattg-aaatttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaat 396  Q
    | ||||||||| | |||||||||||||||||| || |||  |||| |  |||| ||| | ||||||||||||||||||||||||| |||| |||||||||    
T  28655673 t-aactaacagaggtgtacatgagggaccaaaatggaaaagtttataattaagggaccatatcgaaaacaacaaataagttgagggaccatttatgtaat 28655575  T
Q  397 taagcct 403  Q
    |||||||    
T  28655574 taagcct 28655568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 11242935 - 11242855
Alignment:
Q  199 ggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaa 279  Q
    ||||||||||||| | | |||| || ||| ||||||||||||||||| ||||||||||||| ||||||| | |||||||||    
T  11242935 ggtgttggtggttcaccattacatataatggtcctgcaatctaatggctgaaatcatatctgagatattagacattaaaaa 11242855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 11243801 - 11243873
Alignment:
Q  332 gaaatttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcctt 404  Q
    |||| ||||| || |||| ||| ||||| ||||||||||||||||||||| |||| |||||||||| ||||||    
T  11243801 gaaaattttagagttaagggaccaaatctaaaacaacaaataagttgagggaccatttatgtaatttagcctt 11243873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 28657221 - 28657268
Alignment:
Q  357 atcgaaaacaacaaataagttgaggaaccaattatgtaattaagcctt 404  Q
    |||||||||||||||||| |||||| |||| |||| ||||||||||||    
T  28657221 atcgaaaacaacaaataaattgagggaccatttatataattaagcctt 28657268  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 34439576 - 34439634
Alignment:
Q  199 ggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatat 257  Q
    ||||||||||||| | |||||| |||||| ||| | ||||||||||| |||||||||||    
T  34439576 ggtgttggtggttcaccgttacatacaatggtcattcaatctaatggctgaaatcatat 34439634  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 20825519 - 20825432
Alignment:
Q  318 tgagggaccaaattgaaatttttaa-aggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcctta 405  Q
    ||||||||||||| ||||||||| | |  |||  ||| ||||||||||||||||||||||| ||| |||| ||||  ||||||||||||    
T  20825519 tgagggaccaaatagaaattttttagaattaaaggaccaaatcgaaaacaacaaataagttaagg-accatttatacaattaagcctta 20825432  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 199 - 400
Target Start/End: Original strand, 42837554 - 42837757
Alignment:
Q  199 ggtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagt---taacggagtggacc 295  Q
    ||||||||||||| | |||||| |||||| ||||| ||||||||||| ||||||||||||| | |||||   | ||||    |   |||||| | |||||    
T  42837554 ggtgttggtggttcaccgttacatacaatggtcctacaatctaatggctgaaatcatatctcaaatattc--ccttaacggatgactaacggtgaggacc 42837651  T
Q  296 aaattaactaacaggatgtacatgagggaccaaattgaaattttt-aaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgta 394  Q
    || || ||||| ||  ||||||||||| || |||||||||||||| |||| |||  ||| |||||||||||||||||||||||  || || ||||||| |    
T  42837652 aacttcactaaaagagtgtacatgaggaactaaattgaaattttttaaagataaaggaccaaatcgaaaacaacaaataagttaggggactaattatgca 42837751  T
Q  395 attaag 400  Q
    ||||||    
T  42837752 attaag 42837757  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 16362587 - 16362520
Alignment:
Q  231 cctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    ||||||||| || ||||||||||||||| || ||||| | |||||||||  |||||||| ||||||||    
T  16362587 cctgcaatcgaacggttgaaatcatatcaaaaatattagacattaaaaaactaacggagaggaccaaa 16362520  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 40251296 - 40251371
Alignment:
Q  223 acaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    ||||||| ||||||||  |||||||||||||||||| || ||||| | ||||||||| ||||  ||| ||||||||    
T  40251296 acaatagacctgcaattgaatggttgaaatcatatcaaaaatattagacattaaaaaattaattgagaggaccaaa 40251371  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 401
Target Start/End: Complemental strand, 29861667 - 29861496
Alignment:
Q  231 cctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaattaactaacaggatgtacatgagggaccaaat 330  Q
    ||||||||||||||| |||||||  |||||| ||||| | ||| |||||  ||||||| |||| ||| || ||| || | |  ||  | |||||||||||    
T  29861667 cctgcaatctaatggctgaaatcgcatctaaaatattagacataaaaaaactaacggaatggatcaatttgactgacggaacatatttaagggaccaaat 29861568  T
Q  331 tgaaattttt-aaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagc 401  Q
    |||| ||||| |||| |||| ||  |||||||||||||||||||||||  || |||| ||||||||||||||    
T  29861567 tgaatttttttaaagataagggatcaaatcgaaaacaacaaataagttaggggaccagttatgtaattaagc 29861496  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 44553292 - 44553219
Alignment:
Q  309 ggatgtacatgagggaccaaattgaaatt-tttaaaggtaagagactaaatcgaaaacaacaaataagttgagg 381  Q
    |||||||| ||||||||||||||||||   |||| || || ||||| |||| ||||||||||||||||||||||    
T  44553292 ggatgtacttgagggaccaaattgaaaaaatttagagttatgagaccaaattgaaaacaacaaataagttgagg 44553219  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 6707094 - 6707027
Alignment:
Q  231 cctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    |||||||||||||||||||||| |||||  | ||||||| |||||||||  |||||||| ||||||||    
T  6707094 cctgcaatctaatggttgaaattatatcataaatatttgacattaaaaaactaacggaggggaccaaa 6707027  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 2717829 - 2717901
Alignment:
Q  332 gaaatttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcctt 404  Q
    |||| ||||| || |||| ||| |||| |||||||||||||||||| ||| | || |||||||||||||||||    
T  2717829 gaaaattttagagttaagggaccaaattgaaaacaacaaataagttaagggatcatttatgtaattaagcctt 2717901  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 26205986 - 26206062
Alignment:
Q  222 tacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    |||||||| | ||||||| |||||||||||| |||| ||| ||||| | |||||||||  |||||||| ||||||||    
T  26205986 tacaatagacatgcaatcgaatggttgaaattatatataaaatattagtcattaaaaaactaacggagaggaccaaa 26206062  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 28545025 - 28545073
Alignment:
Q  355 aaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcct 403  Q
    |||||||||||||||||||| || ||| || | ||||||||||||||||    
T  28545025 aaatcgaaaacaacaaataaattaagggacaatttatgtaattaagcct 28545073  T

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Target: scaffold0176 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 16108 - 16038
Alignment:
Q  332 gaaatttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcc 402  Q
    |||| |||||||| |||| ||  ||||||||||||||||||||||| ||| |||| |||| ||||||||||    
T  16108 gaaaattttaaagttaagggatcaaatcgaaaacaacaaataagttaagggaccatttatataattaagcc 16038  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 39881614 - 39881680
Alignment:
Q  337 ttttaaaggtaagagactaaatcgaaaacaacaaataagttgaggaaccaattatgtaattaagcct 403  Q
    |||||||| ||||  || |||||||||||||||||||||||  || || ||||||||||||||||||    
T  39881614 ttttaaagataaggtaccaaatcgaaaacaacaaataagttaggggactaattatgtaattaagcct 39881680  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 1273257 - 1273190
Alignment:
Q  231 cctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaa 298  Q
    ||||||||| |||||||||||||||||| || |||||   |||||||||  |||||||| ||||||||    
T  1273257 cctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggaggggaccaaa 1273190  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 10736887 - 10736952
Alignment:
Q  235 caatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacggagtggaccaaatt 300  Q
    ||||| ||||||| |||||| ||| || || || | ||||||||||||||||||| ||||||||||    
T  10736887 caatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagttaacggaggggaccaaatt 10736952  T

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Target: scaffold0148 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 15766 - 15854
Alignment:
Q  200 gtgttggtggtttatcgttacttacaatagtcctgcaatctaatggttgaaatcatatctaagatatttggcattaaaaagttaacgga 288  Q
    |||||||||||| | |||||| ||| || |||||  |||||||||  ||||||||||||| | ||||| |||||||||||  |||||||    
T  15766 gtgttggtggttcaccgttacatactatcgtcctagaatctaatgactgaaatcatatctgaaatattaggcattaaaaaactaacgga 15854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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