View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_high_5 (Length: 448)
Name: NF11465_high_5
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 1890811 - 1890474
Alignment:
| Q |
9 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcac |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890811 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcac |
1890712 |
T |
|
| Q |
109 |
cacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctga |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890711 |
cacaggtggcaaaacatccttgtaaaaggaccatcttcttctcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctga |
1890612 |
T |
|
| Q |
209 |
agttcagaatttctgtgagatgtttttcatgatgaggtttggaccataaactgaaatgaaagataaaagttggttggttgtattaaaagttggtatatta |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890611 |
agttcagaatttctatgagatgtttttcatgatgaggtttggaccataaactgaaatgaaagataaaagttggttggttgtattaaaagttggtatatta |
1890512 |
T |
|
| Q |
309 |
tttaagaaactgtttatatactcccattgtactttgct |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
1890511 |
tttaagaaactgtttatatactcccattgtactttgct |
1890474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 1895653 - 1895517
Alignment:
| Q |
17 |
gcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtg |
116 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
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| T |
1895653 |
gcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattg |
1895554 |
T |
|
| Q |
117 |
gcaaaacatccttgtaaaatgaccatcttcttgtcat |
153 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||| |
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| T |
1895553 |
gcaaaacatccatgtaaaaggaccatcttcttgtcat |
1895517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 1911117 - 1910928
Alignment:
| Q |
9 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcac |
108 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| | | ||| ||||| |
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| T |
1911117 |
aagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcac |
1911018 |
T |
|
| Q |
109 |
cacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaa |
199 |
Q |
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||||||||| ||||||| |||| || ||||||||||||||||| ||||| | ||||||| ||||| |||||||||||||||||||||| |
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| T |
1911017 |
agcaggtggcagaacatccatgtacaaggaccatcttcttgtcat-gtttctgtcacttctatgttctttcagttacacaacaatcacaaa |
1910928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 1884167 - 1883959
Alignment:
| Q |
9 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| | ||| | ||||| ||||| |
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| T |
1884167 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcac |
1884068 |
T |
|
| Q |
109 |
cacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctga |
208 |
Q |
| |
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|||||||||| || |||| ||||||| |||| | |||||||||| ||||| || ||||||||| |||| || |||||||||||||| || ||| |
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| T |
1884067 |
aacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcat-ctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttga |
1883969 |
T |
|
| Q |
209 |
agttcagaat |
218 |
Q |
| |
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|||||||||| |
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|
| T |
1883968 |
agttcagaat |
1883959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 1902072 - 1901928
Alignment:
| Q |
9 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcac |
108 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||| | ||| | ||||| ||||| |
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| T |
1902072 |
aagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcac |
1901973 |
T |
|
| Q |
109 |
cacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcat |
153 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
1901972 |
cacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcat |
1901928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 1878155 - 1878084
Alignment:
| Q |
9 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
80 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| |||||||| |
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|
| T |
1878155 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
1878084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 11537577 - 11537528
Alignment:
| Q |
32 |
ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
81 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||| ||| |||| |
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| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccat |
11537528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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