View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_high_6 (Length: 430)
Name: NF11465_high_6
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 412
Target Start/End: Complemental strand, 34816581 - 34816186
Alignment:
| Q |
17 |
cacagacaagaacaataatgaaacaaaaaccacataaacatgtactacggatgcaactaaaagaacatgcaaactaaggtgcaaccctgatagaggatat |
116 |
Q |
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| T |
34816581 |
cacagacaagaacaataatgaaacaaaaaccacataaacatgtactacggatgcaactaaaagaacatgcaaactaaggtgcaaccctgatagaggatat |
34816482 |
T |
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| Q |
117 |
tcccagcgtaaatatatgttgtttaatttggacagcaattggtgatccaaaacatcccaatatatatgttgctcgatctcttagatgatgttaatagaat |
216 |
Q |
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| T |
34816481 |
tcccagcgtaaatatatgttgtttaatttggacagcaattggtgatccaaaacatcccaatatatatgttgctcgatctcttagatgatgttaatagaat |
34816382 |
T |
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| Q |
217 |
atagatttttccggattttataagagttagaggacaattcttgaatgaagataactacttccaaccactatattcaagaatcttagtgtgccaacccaac |
316 |
Q |
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| T |
34816381 |
atagatttttccggattttataagagttagaggacaattcttgaatgaagataactacttccaaccactatattcaagaatcttagtgtgccaacccaac |
34816282 |
T |
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| Q |
317 |
ccattcatgtctgatattttaaatattcccaataaatttatatctgtctactactattaagtcacaatattgaaaacaaatgttgatgtgtattct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816281 |
ccattcatgtctgatattttaaatattcccaataaatttatatctgtctactactattaagtcacaatattgaaaacaaatgttgatgtgtattct |
34816186 |
T |
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