View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_high_8 (Length: 409)
Name: NF11465_high_8
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 49466161 - 49466552
Alignment:
| Q |
1 |
ttgctataattgacatgctgtttggtgtactgtttgtgtcctgcttttacccattatgaagaccaggtacaaaagaatatcttctgattaaagaagagtt |
100 |
Q |
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| T |
49466161 |
ttgctataattgacatgctgtttggtgtactgtttgtgtcctgcttttacccattatgaagaccaggtacaaaagaatatcttctgattaaagaagagtt |
49466260 |
T |
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| Q |
101 |
gaggaaggtattgacaaagggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaacacaggtatacatcta |
200 |
Q |
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| T |
49466261 |
gaggaaggtattgacaaagggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaacacaggtatacatcta |
49466360 |
T |
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| Q |
201 |
gctcaggggattaatttctaaaataagaatgctgttagttttcacacagtttccagcaaaatcaaccaatgaataaatctgaatcttgtataatggataa |
300 |
Q |
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| T |
49466361 |
gctcaggggattaatttctaaaataagaatgctgttagttttcacacagtttccagcaaaatcaaccaatgaataaatctgaatcttgtataatggataa |
49466460 |
T |
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| Q |
301 |
aatacttgcgttgaaaggactgacattatcaatattgaagatta--ttcagttttaggcatcaattaaatctttagatactccacatttctg |
390 |
Q |
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| T |
49466461 |
aatacttgcgttgaaaggactgacattatcaatattgaagattattttcagttttaggcatcaattaaatctttagatactccacatttctg |
49466552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 119 - 311
Target Start/End: Original strand, 52087769 - 52087961
Alignment:
| Q |
119 |
gggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaacacaggtatacatctagctcaggggattaatttc |
218 |
Q |
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| T |
52087769 |
gggaaaggctgcaggtgtgcttcgtttggttttccatgatgctggaacttttgaaattgatgacaatagaggtatacatctagctcaggggattaatttc |
52087868 |
T |
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| Q |
219 |
taaaataagaatgctgttagttttcacacagtttccagcaaaatcaaccaatgaataaatctgaatcttgtataatggataaaatacttgcgt |
311 |
Q |
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| T |
52087869 |
taaaataagaatgctgttagttttcacacagtttccagcaaaatcaaccaatgaataaatcggaatcttgtataatggataaaatacttgcgt |
52087961 |
T |
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