View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_low_1 (Length: 744)
Name: NF11465_low_1
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 34331588 - 34332047
Alignment:
| Q |
11 |
cataggcacgaggttcattttgtttggactttagagtataatgcaagtgttgtttatgatgataaattagacaagtcttgcagtgatatttcccatcacg |
110 |
Q |
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| T |
34331588 |
cataggcacgaggttcattttgtttggactttagagtataatgcaagtgttgtttatgatgataaattagacaagtcttgcagtgatatttcccatcacg |
34331687 |
T |
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| Q |
111 |
aacgtggcaaaccctttaattttgcctaggcatgaccatgatgattgatgatcaaaactcagtcactcactcatgaatgatcaaaaattgatacatcgtt |
210 |
Q |
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| T |
34331688 |
aacgtggcaaaccctttaattttgcctaggcatgaccatgatgattgatgatcaaaactcactcactcatgaatgaatgatcaaaaattgatacatcgtt |
34331787 |
T |
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| Q |
211 |
acaattttgttttgttgcacttgcacatgcatgatgcacatgaccttatagcttaattaaagcttgcaacattggtgctactagcttgatcacgcttcct |
310 |
Q |
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| T |
34331788 |
acaattttgttttgttgcacttgcacatgcatgatgcacatgaccttatagcttaattaaagcttgcaacattggtgctactagcttgatcacgcttcct |
34331887 |
T |
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| Q |
311 |
actaatacaagatttcttgatatgccactgtggggtcactcaccctttgcttgatagaaggaaaaatagaaagccttcaccaatgaggcaccattttgta |
410 |
Q |
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| T |
34331888 |
actaatacaagatttcttgatatgtcactgtggggtcacccaccctttgcttgatagaaggaaaaatagaaagccttcaccaatgaggcaccattttgta |
34331987 |
T |
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| Q |
411 |
tggaccccgagtcctatgtacggtcacatcctcaaatgatcatgccttttttgtgtgaaa |
470 |
Q |
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| T |
34331988 |
tggaccccgagtcctatgtacggtcacatctccaaatgatcatgccttttttgtgggaaa |
34332047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 542 - 703
Target Start/End: Original strand, 34332511 - 34332672
Alignment:
| Q |
542 |
gtagtagtttttaaccttcatttaggttaagtaaaaaagaaagagtaattggcttaaacccaaattataatatgacattaaagtttatcttagannnnnn |
641 |
Q |
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| T |
34332511 |
gtagtagtttttaagattgatttaggttaagtaaaaaagaaagagtaataggcataaaccgaaattataatatgatattaaagtttatattaaaaaaatt |
34332610 |
T |
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| Q |
642 |
nggatcaccccgttactgcgtcatcaaatcacactctagatgttcgttcgtgatatttttta |
703 |
Q |
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| T |
34332611 |
tggatcatcccgttactctgtcatcaaatcacactctagatgttcgttcgtaatatttttta |
34332672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 34332176 - 34332224
Alignment:
| Q |
466 |
tgaaaatttatttataaataattttaaatgtgtaggagatattccttat |
514 |
Q |
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||||||| |||||||||||||||||||||||| | ||||||||| |||| |
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| T |
34332176 |
tgaaaatgtatttataaataattttaaatgtgcatgagatattcattat |
34332224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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