View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_low_10 (Length: 329)
Name: NF11465_low_10
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 43111675 - 43111982
Alignment:
| Q |
1 |
taaatgttaaggaattatacatatacctaatactaataaataatgaagagtttccatgatatatatgcacagaacaacgcataaacttacaagttcatag |
100 |
Q |
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| T |
43111675 |
taaatgttaaggaattatacatatacctaatactaataaataatgaagagtttccatgatatatatgcacagaacaacgcataaacttacaagttcgtag |
43111774 |
T |
|
| Q |
101 |
actaaggaaattgtgannnnnnnaccgagcaaacttagctgatcaagcatcatttctgcgtccctaagagaaccacatgatttagcagcaatgaaatcca |
200 |
Q |
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| T |
43111775 |
actaaggaaattgtgatttttttaccaagcaaacttagctgatcaagcatcatttctgcgtccctaagagaaccacatgatttagcagcaatgaaatcca |
43111874 |
T |
|
| Q |
201 |
aagcatcttgttcggactcaagaccttcttcaacgcaaattcttttgagtctgctagcaatgtcagcatctttaatctttgtaaagtgatacctttgagc |
300 |
Q |
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| T |
43111875 |
aagcatcttgttcggactcaagaccttcttcaacgcaaattcttttgagtctgctagcaatgtcagcatctttaatctttgtaaagtgatacctttgagc |
43111974 |
T |
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| Q |
301 |
tcgagaaa |
308 |
Q |
| |
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|||||||| |
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| T |
43111975 |
tcgagaaa |
43111982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 34259595 - 34259741
Alignment:
| Q |
85 |
acttacaagttcatagactaaggaaattgtgannnnnnnaccgagcaaacttagctgatcaagcatcatttctgcgtccctaagagaaccacatgattta |
184 |
Q |
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| T |
34259595 |
acttacaagctcataaactaaggaaattttgatctttttaccaagcaaactgagttgatcaagcataatttctgcatccctgacagaaccacaggatctt |
34259694 |
T |
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| Q |
185 |
gcagcaatgaaatccaaagcatcttgttcggactcaagaccttcttc |
231 |
Q |
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| T |
34259695 |
gcagcaataaggtctaaagcagcctgttcaaaatcaagaccttcttc |
34259741 |
T |
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