View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11465_low_14 (Length: 285)
Name: NF11465_low_14
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 43281726 - 43281474
Alignment:
| Q |
19 |
ctctttaattcgaaagttgacttttaattaacaaaggannnnnnn-ggaactacaagtacaagactggtatttatacgctaaagtgtttcacataagcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43281726 |
ctctttaattcgaaagttgacttttaattaacaaaggattttttttggaactacaagtacaagactggtatttatacgctaaagtgtttcacataagcta |
43281627 |
T |
|
| Q |
118 |
aattttgctagcattaacagttaaacacttacaggtagatgtataatataaataaataaggaaaaatgttaacttgtgcttttagggtataagttaaaag |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
43281626 |
agttttgctagcattaacagttaaacacttacaggtagatgtataatataa----ataaggaaaaatgttaacttgtgctcttagggcataagttaaaag |
43281531 |
T |
|
| Q |
218 |
gctaaatgtaaagtgtctcttctatctaagcctcaattctcgcttaagcgttttcat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
43281530 |
gctaaatgtaaagtgtctcttctatctaagcctcaatttttgcttaagcgttttcat |
43281474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University