View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11465_low_16 (Length: 271)

Name: NF11465_low_16
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11465_low_16
NF11465_low_16
[»] chr6 (8 HSPs)
chr6 (24-261)||(21971621-21971858)
chr6 (24-234)||(20205087-20205297)
chr6 (24-234)||(22099110-22099320)
chr6 (60-221)||(20237693-20237854)
chr6 (60-221)||(22131677-22131838)
chr6 (61-221)||(24385435-24385595)
chr6 (59-214)||(20085787-20085942)
chr6 (61-221)||(22205223-22205383)
[»] scaffold0074 (1 HSPs)
scaffold0074 (59-221)||(48047-48209)
[»] scaffold0007 (1 HSPs)
scaffold0007 (59-221)||(5574-5736)
[»] scaffold0264 (1 HSPs)
scaffold0264 (61-221)||(15730-15890)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 21971858 - 21971621
Alignment:
Q  24 gtcgaacgccaccatcggcnnnnnnntttattggcttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgt 123  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21971858 gtcgaacgccaccatcggcaaaaaattttattggcttaaagtggaagaaattgcgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgt 21971759  T
Q  124 gttcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcga 223  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21971758 gttcaatgcgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcga 21971659  T
Q  224 ataggtatttcattcatagcattgaaacagggcctatg 261  Q
    |||||||||||||||| |||||||||||||||||||||    
T  21971658 ataggtatttcattcacagcattgaaacagggcctatg 21971621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 20205297 - 20205087
Alignment:
Q  24 gtcgaacgccaccatcggcnnnnnnntttattggcttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgt 123  Q
    |||||||||||||||||||       || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||  || | || |||    
T  20205297 gtcgaacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccttctagactctgt 20205198  T
Q  124 gttcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcga 223  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||||| | || |||| |||||||||||||||||||||||||| | ||||||||||| |    
T  20205197 gttcaatgcgtcaaaaacgcaacggaagaactatactcaaagtgtcaatactccccacagggtataatttggtacagccattgcttacttcgctattcaa 20205098  T
Q  224 ataggtatttc 234  Q
    ||  |||||||    
T  20205097 atcagtatttc 20205087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 22099320 - 22099110
Alignment:
Q  24 gtcgaacgccaccatcggcnnnnnnntttattggcttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgt 123  Q
    |||||||||||||||||||       || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||  || | || |||    
T  22099320 gtcgaacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccttctagactctgt 22099221  T
Q  124 gttcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcga 223  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||||| | || |||| |||||||||||||||||||||||||| | ||||||||||| |    
T  22099220 gttcaatgcgtcaaaaacgcaacggaagaactatactcaaagtgtcaatactccccacagggtataatttggtacagccattgcttacttcgctattcaa 22099121  T
Q  224 ataggtatttc 234  Q
    ||  |||||||    
T  22099120 atcagtatttc 22099110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 20237854 - 20237693
Alignment:
Q  60 taaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatac 159  Q
    ||||||||||||||  ||||| || |||||| ||||||||||||| |||||   |||||| |||| ||||||||| ||||||||  |||||||| |||||    
T  20237854 taaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcgcctctgtggtcaatgtgtaaaaaatgctgcggaacaaatatac 20237755  T
Q  160 tcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 221  Q
    |||||||||| ||| | |||| |||||||||||||||||||||| ||| |||||||||||||    
T  20237754 tcaaagtgtctttcttgcccaaagggtataatttggtacagccactgcttgcttcgctattc 20237693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 22131838 - 22131677
Alignment:
Q  60 taaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatac 159  Q
    ||||||||||||||  ||||| || |||||| ||||||||||||| |||||   |||||| |||| ||||||||| ||||||||  |||||||| |||||    
T  22131838 taaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcgcctctgtggtcaatgtgtaaaaaatgctgcggaacaaatatac 22131739  T
Q  160 tcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 221  Q
    |||||||||| ||| | |||| |||||||||||||||||||||| ||| |||||||||||||    
T  22131738 tcaaagtgtctttcttgcccaaagggtataatttggtacagccactgcttgcttcgctattc 22131677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 24385435 - 24385595
Alignment:
Q  61 aaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatact 160  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||||   ||| || |||| ||||||||| ||||||||||| || ||| ||||||    
T  24385435 aaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcgtctctgtggtcaatgtgtaaaaaatgcaactgaccaaatatact 24385534  T
Q  161 caaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 221  Q
    ||||||||| ||| |  ||| |||||||| ||||||||||||| ||| |||||| ||||||    
T  24385535 caaagtgtcgttcatctccaaagggtatagtttggtacagccactgcttgcttcactattc 24385595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 20085942 - 20085787
Alignment:
Q  59 ttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactata 158  Q
    |||||||||| ||||| ||||| || |||||| ||||||||||||| |||||   |||||| |||| ||||||||| ||||||||||| || ||| ||||    
T  20085942 ttaaagtggatgaaatggtgtacggcctcttcttgtgtcgaggtgaccttcctgttcgcctctgtggtcaatgtgtaaaaaatgcaactgaccaaatata 20085843  T
Q  159 ctcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttc 214  Q
    ||||||||||| ||| |  ||| |||||||||||||||||||||| ||| ||||||    
T  20085842 ctcaaagtgtctttcatctccaaagggtataatttggtacagccactgcttgcttc 20085787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 22205223 - 22205383
Alignment:
Q  61 aaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatact 160  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||||   || ||| || | ||||||||| |||||||||||||| ||| ||||||    
T  22205223 aaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcacctctgcggtcaatgtgttaaaaatgcaacggatcaaatatact 22205322  T
Q  161 caaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 221  Q
    ||||||||| ||| |  ||  |||| ||||||||||||||||| ||| || ||||||||||    
T  22205323 caaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattc 22205383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 48047 - 48209
Alignment:
Q  59 ttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactata 158  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||| |||||   |||||| |||| ||||||||| ||||| |||||||| ||| ||||    
T  48047 ttaaagtggaagaaatgctgtatggcctcttcatgtgtcgaggtgaccttcccgttcgcctctgtggtcaatgtgtgaaaaaagcaacggaccaaatata 48146  T
Q  159 ctcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 221  Q
    ||||||||||| ||| |  ||| |||||||||||||||||||||| ||| || ||||||||||    
T  48147 ctcaaagtgtctttcatctccaaagggtataatttggtacagccactgcttggttcgctattc 48209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 5574 - 5736
Alignment:
Q  59 ttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactata 158  Q
    |||||||||||||||   ||||||| |||||||||||||||||||| |||||   || ||| |||| || |||||| |||||||||||||| ||| ||||    
T  5574 ttaaagtggaagaaacgctgtatggcctcttcatgtgtcgaggtgaccttcccgttcacctctgtgctcgatgtgtgaaaaatgcaacggatcaaatata 5673  T
Q  159 ctcaaagtgtcattc-cttcccagagggtataatttggtacagccattgcctgcttcgctattc 221  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||| ||| || ||||||||||    
T  5674 ctcaaagtgtctttcacgtccca-agggtataatttggtacagccactgcttggttcgctattc 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 15890 - 15730
Alignment:
Q  61 aaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatact 160  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||||   || ||| || | ||||||||| |||||||||||||| ||| ||||||    
T  15890 aaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcacctctgcggtcaatgtgttaaaaatgcaacggatcaaatatact 15791  T
Q  161 caaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 221  Q
    ||||||||| ||  |  ||  |||| ||||||||||||||||| ||| || ||||||||||    
T  15790 caaagtgtctttgatgtcctaagggcataatttggtacagccactgcttggttcgctattc 15730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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