View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11465_low_23 (Length: 231)

Name: NF11465_low_23
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11465_low_23
NF11465_low_23
[»] chr1 (22 HSPs)
chr1 (36-219)||(14669678-14669861)
chr1 (36-219)||(14706043-14706226)
chr1 (36-219)||(14654309-14654492)
chr1 (36-219)||(14664100-14664283)
chr1 (36-213)||(14681560-14681737)
chr1 (36-219)||(14716246-14716429)
chr1 (36-213)||(14674442-14674619)
chr1 (34-219)||(14708533-14708718)
chr1 (36-213)||(14679820-14679997)
chr1 (36-219)||(14683705-14683888)
chr1 (36-219)||(14652480-14652663)
chr1 (36-219)||(14662271-14662454)
chr1 (32-206)||(33988038-33988212)
chr1 (37-181)||(38175500-38175644)
chr1 (36-206)||(28366167-28366338)
chr1 (79-219)||(14676587-14676727)
chr1 (57-219)||(14667101-14667262)
chr1 (33-171)||(11872446-11872585)
chr1 (96-168)||(37422175-37422247)
chr1 (102-178)||(28698549-28698625)
chr1 (61-120)||(14703134-14703193)
chr1 (33-120)||(7448393-7448480)
[»] chr2 (25 HSPs)
chr2 (36-219)||(30731963-30732146)
chr2 (36-180)||(32918074-32918218)
chr2 (36-219)||(30733944-30734126)
chr2 (32-185)||(9026775-9026929)
chr2 (32-181)||(43850042-43850191)
chr2 (32-206)||(8973280-8973455)
chr2 (58-175)||(2841008-2841125)
chr2 (32-185)||(9020836-9020990)
chr2 (32-177)||(9008018-9008164)
chr2 (32-172)||(19232365-19232504)
chr2 (32-206)||(9016461-9016639)
chr2 (56-185)||(9030387-9030516)
chr2 (101-185)||(9032042-9032126)
chr2 (93-206)||(9023415-9023528)
chr2 (107-185)||(8979311-8979389)
chr2 (67-167)||(10763878-10763978)
chr2 (38-181)||(8984686-8984830)
chr2 (56-206)||(8988423-8988574)
chr2 (61-183)||(8992139-8992262)
chr2 (32-119)||(8912989-8913078)
chr2 (57-146)||(17225653-17225743)
chr2 (67-172)||(6471709-6471813)
chr2 (58-170)||(35701893-35702005)
chr2 (55-143)||(17275862-17275950)
chr2 (136-171)||(39814115-39814150)
[»] chr4 (17 HSPs)
chr4 (32-208)||(50077164-50077340)
chr4 (32-187)||(11652357-11652512)
chr4 (57-208)||(49106519-49106670)
chr4 (32-208)||(49108598-49108774)
chr4 (32-183)||(3461107-3461258)
chr4 (56-173)||(26998729-26998846)
chr4 (68-173)||(26984668-26984773)
chr4 (62-173)||(48205832-48205943)
chr4 (57-146)||(21503706-21503795)
chr4 (69-172)||(41013548-41013651)
chr4 (67-167)||(26982549-26982646)
chr4 (74-208)||(49533638-49533765)
chr4 (65-138)||(35806165-35806238)
chr4 (67-110)||(54677590-54677633)
chr4 (67-117)||(34481105-34481155)
chr4 (114-167)||(6431957-6432010)
chr4 (133-169)||(34481155-34481191)
[»] chr6 (7 HSPs)
chr6 (34-208)||(10795857-10796031)
chr6 (34-208)||(10791619-10791793)
chr6 (32-174)||(30521242-30521384)
chr6 (47-172)||(8875691-8875818)
chr6 (36-120)||(13136608-13136692)
chr6 (57-131)||(11333273-11333347)
chr6 (68-167)||(21216032-21216131)
[»] chr8 (14 HSPs)
chr8 (32-207)||(41841117-41841292)
chr8 (32-174)||(40054312-40054454)
chr8 (36-219)||(10944368-10944550)
chr8 (57-207)||(44878950-44879100)
chr8 (57-207)||(44880821-44880971)
chr8 (32-172)||(37679757-37679897)
chr8 (75-174)||(37682057-37682156)
chr8 (38-182)||(42555053-42555198)
chr8 (57-157)||(44582870-44582970)
chr8 (101-207)||(42220880-42220985)
chr8 (131-181)||(42872514-42872564)
chr8 (101-185)||(42092010-42092093)
chr8 (37-114)||(42554632-42554709)
chr8 (68-120)||(44583111-44583162)
[»] chr5 (8 HSPs)
chr5 (56-181)||(7524961-7525086)
chr5 (32-174)||(3643640-3643782)
chr5 (57-185)||(1716441-1716570)
chr5 (56-170)||(4103249-4103363)
chr5 (32-141)||(5350672-5350781)
chr5 (65-172)||(16037861-16037966)
chr5 (56-120)||(13636366-13636430)
chr5 (103-167)||(19261152-19261216)
[»] chr7 (2 HSPs)
chr7 (57-174)||(27134511-27134628)
chr7 (56-168)||(8128149-8128260)
[»] scaffold0549 (1 HSPs)
scaffold0549 (32-120)||(5450-5538)
[»] chr3 (1 HSPs)
chr3 (126-172)||(15758562-15758608)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 14669678 - 14669861
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14669678 tagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14669777  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669778 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 14669861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 14706226 - 14706043
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14706226 tagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14706127  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  14706126 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcggtgctgcttttatatcagaaacgttctc 14706043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 14654309 - 14654492
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14654309 tagcaagctactgaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14654408  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||| |||||| |||||    
T  14654409 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttctc 14654492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 14664100 - 14664283
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14664100 tagcaagctactgaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14664199  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||| |||||| |||||    
T  14664200 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttctc 14664283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 14681737 - 14681560
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14681737 tagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14681638  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacat 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||    
T  14681637 ctacacttgatcttagccaaaaggccgagaaaggtataagttgaaaaatgggctaggtgctgcttttatatcagacat 14681560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 14716429 - 14716246
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  14716429 tagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagata 14716330  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| |||||    
T  14716329 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttctc 14716246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 14674619 - 14674442
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14674619 tagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagata 14674520  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||    
T  14674519 ctacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatcagacat 14674442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 14708718 - 14708533
Alignment:
Q  34 aatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacaga 133  Q
    |||||||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14708718 aatagcaagctactaaagtgacctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacaga 14708619  T
Q  134 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||| ||||| |||||    
T  14708618 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcactagtgcttttatatctgacattttctc 14708533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 14679997 - 14679820
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| | ||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14679997 tagcaagctactaatatggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagata 14679898  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||    
T  14679897 ctacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatcagacat 14679820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 14683888 - 14683705
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14683888 tagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14683789  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||| ||||||||| ||||||| |||||    
T  14683788 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatggactagctgccgcttttataacagacatcttctc 14683705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 14652663 - 14652480
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  14652663 tagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagata 14652564  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||||||||||||||||||||||||||||||||||||||| || || || || |  | ||||||| ||||||||||||| |||||    
T  14652563 ctacacttgatcttagccaaaaggccgagaaaggtatgatttcaatgaaggaccagctgctgctcttatatcagacatcttctc 14652480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 14662454 - 14662271
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  14662454 tagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagata 14662355  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||||||||||||||||||||||||||||||||||||||| || || || || |  | ||||||| ||||||||||||| |||||    
T  14662354 ctacacttgatcttagccaaaaggccgagaaaggtatgatttcaatgaaggaccagctgctgctcttatatcagacatcttctc 14662271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 33988212 - 33988038
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||  |||||  |||||||||||||||||||| ||||||||||    
T  33988212 ccaatagcaagctattgaaatggcctctcccccttaaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaaca 33988113  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |  |||||||||||    
T  33988112 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactcacttatgcttttatat 33988038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 38175500 - 38175644
Alignment:
Q  37 agcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatac 136  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  38175500 agcaagctactgaggtggtttctccccctcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatac 38175599  T
Q  137 tacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38175600 tacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 38175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 28366167 - 28366338
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtc-cacatatcagatattaaaccgataagaacagat 134  Q
    ||||||||||||  ||| |||||||||||| ||||||||||||||||||||||||| |||||||   ||||||||||||||||||| |||||||||||||    
T  28366167 tagcaagctactataatagtctctcccccttaaaaaagtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataagaacagat 28366266  T
Q  135 actacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||   ||||||||||||    
T  28366267 actacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaggggttcgcatctgcttttatat 28366338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 14676727 - 14676587
Alignment:
Q  79 taatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 178  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 14676628  T
Q  179 aaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||| |||| || | ||| ||||||||| ||||||| |||||    
T  14676627 aaatatggactagctgccgcttttataacagacatcttctc 14676587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 14667101 - 14667262
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 156  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  14667101 tctccccctagaaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaaa 14667200  T
Q  157 aggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    |||||||||||||||||||||  || ||| | ||  ||||||||||||||| |||||||||||    
T  14667201 aggccgagaaaggtatgagttacaacatgagatc-ctgctgcttttatatctgacatgttctc 14667262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 11872446 - 11872585
Alignment:
Q  33 caatagcaagctactgaaatggtctctccccctcaaaa-aagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||  ||||||| |||||||||| |||| ||||||||||||||||||||| ||||||  |||||||||| ||||||||| ||||||||||    
T  11872446 caatagcaagctatcgaaatggcctctcccccttaaaaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaaca 11872545  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggta 171  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  11872546 gatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 37422247 - 37422175
Alignment:
Q  96 ttggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaag 168  Q
    |||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||    
T  37422247 ttggaccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 28698625 - 28698549
Alignment:
Q  102 cacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 178  Q
    ||||||||| ||||||||  ||||| || | |||||||| ||||||||||||||||| |||||||| ||||||||||    
T  28698625 cacatatcaaatattaaattgataaaaatatatactacatttgatcttagccaaaagaccgagaaatgtatgagttg 28698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 14703193 - 14703134
Alignment:
Q  61 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 120  Q
    ||||| |||||  ||||||||||||||||| || |||||||||||||||| |||||||||    
T  14703193 cccctaaaaaatttaatttaatatcgtgtggactattggtccacatatcaaatattaaac 14703134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 7448393 - 7448480
Alignment:
Q  33 caatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 120  Q
    ||||||||| ||| ||  ||||| ||| ||| |||||||||||||| |||||||| | |  |||| | ||||||||||||||||||||    
T  7448393 caatagcaaactattgtgatggtttcttcccttcaaaaaagtaattcaatatcgtataattcatttgaccacatatcagatattaaac 7448480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 30732146 - 30731963
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||  || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  30732146 tagcaagctaccaaagtggcctccccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagata 30732047  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732046 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 30731963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 32918218 - 32918074
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  32918218 tagcaagctactgcaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagata 32918119  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32918118 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 32918074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 30734126 - 30733944
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| ||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30734126 tagcaagctactaaaatggcttctccccctaaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagata 30734027  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    ||||||||||||||||||||||||||||||||||||| ||||  || ||| | ||  ||||||||||||||| |||||||||||    
T  30734026 ctacacttgatcttagccaaaaggccgagaaaggtataagttacaacatgagatc-ctgctgcttttatatctgacatgttctc 30733944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 9026929 - 9026775
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaac 130  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||  || |||| ||||||| ||||  |||||||||||||| |||||||||    
T  9026929 ccaatagcaagctattgaaatggtctctcccactcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactgataagaac 9026830  T
Q  131 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026829 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 9026775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 43850191 - 43850042
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| |||| ||  ||||||||||||||||||| |||||||||| |||||  |||||| |||||||||||||||||||| ||||||||||    
T  43850191 ccaatagcaagctattgaagtgacctctccccctcaaaaaagtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaaca 43850092  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850091 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 43850042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 8973455 - 8973280
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaac 130  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||||||||| || |||| ||||||| ||||  ||||||||||||||  ||||||||    
T  8973455 ccaacagcaagctattgaaatggtctctcccccttaaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaac 8973356  T
Q  131 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |  |||||||||||    
T  8973355 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaactcgcttatgcttttatat 8973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 2841008 - 2841125
Alignment:
Q  58 ctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaa 157  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2841008 ctccccctcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 2841107  T
Q  158 ggccgagaaaggtatgag 175  Q
    ||||||||||||||||||    
T  2841108 ggccgagaaaggtatgag 2841125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 9020990 - 9020836
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaac 130  Q
    ||||||||||| || |||||||| ||||| ||||||||||||||||||||||  || |||| ||||||| |||||| ||||||||||||  |||||||||    
T  9020990 ccaatagcaagttattgaaatggcctctcaccctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaac 9020891  T
Q  131 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9020890 agatactacacttgatcttagccaaaaggccgagaaatgtatgaattgaaagatg 9020836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 9008164 - 9008018
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtg-tgaaccattggtccacatatcagatattaaaccgataagaac 130  Q
    |||||| |||| || |||||||| ||||||||||||||||||||||||||||  ||  ||| ||||||| ||||  |||||||||||||| |||||||||    
T  9008164 ccaataacaagttattgaaatggcctctccccctcaaaaaagtaatttaatactgttatgacccattgggccactaatcagatattaaactgataagaac 9008065  T
Q  131 agatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9008064 agatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 9008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 19232365 - 19232504
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| |||| |||  ||||||||||||||| |||||||||||| |||||| ||| |||  |||||||||| |||||||| ||||||||||    
T  19232365 ccaatagcaagctattgaagtggcttctccccctcaaaaaggtaatttaatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaaca 19232463  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtat 172  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  19232464 gatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 9016639 - 9016461
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaacc---gataag 127  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||  || |||| ||||||| ||||  ||||||||||||||    ||||||    
T  9016639 ccaatagcaagctattgaaattgtctctccccctcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactactgataag 9016540  T
Q  128 aacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatat 206  Q
    ||||||||||||| |||||||||||||||||| |||  |||||||||||| |||||||  |||| |  |||||||||||    
T  9016539 aacagatactacatttgatcttagccaaaaggtcgaataaggtatgagttaaaagatgaactcgcttatgcttttatat 9016461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 9030516 - 9030387
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 155  Q
    ||||||||||||||||||||||||||||  |||||| ||||||  |||| | ||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  9030516 ctctccccctcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaa 9030417  T
Q  156 aaggccgagaaaggtatgagttgaaagatg 185  Q
    |||||| |||||  ||||||||||||||||    
T  9030416 aaggccaagaaaaatatgagttgaaagatg 9030387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 9032126 - 9032042
Alignment:
Q  101 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaagatg 9032042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 9023528 - 9023415
Alignment:
Q  93 ccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgt 192  Q
    ||||||| ||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||     
T  9023528 ccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagttggactcgc 9023429  T
Q  193 tgctgcttttatat 206  Q
    |  |||||||||||    
T  9023428 ttatgcttttatat 9023415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 8979389 - 8979311
Alignment:
Q  107 atcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 185  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979389 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 8979311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 10763878 - 10763978
Alignment:
Q  67 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 166  Q
    |||||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| |||||||    
T  10763878 aaaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgagaa 10763977  T
Q  167 a 167  Q
    |    
T  10763978 a 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 8984830 - 8984686
Alignment:
Q  38 gcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatac 136  Q
    |||||||| ||||||||  ||| || |||||||||| ||||||| | | | |||| ||||| | ||||  |||| |||||||||  ||||||||| ||||    
T  8984830 gcaagctattgaaatggcatctacctctcaaaaaagcaatttaaaaccattgtgacccattaggccactaatcaaatattaaactaataagaacaaatac 8984731  T
Q  137 tacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8984730 tacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 8984686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 8988574 - 8988423
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagcca 154  Q
    ||||| ||||||||||||||||||||||| || | |||||||||   |||  |||| ||||||||| |||||||||| ||||||||||||||||| ||||    
T  8988574 ctctcaccctcaaaaaagtaatttaatattgttgagaaccattgagtcactgatcaaatattaaactgataagaacaaatactacacttgatcttcgcca 8988475  T
Q  155 aaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatat 206  Q
    ||||||| |||| ||||| ||||||||||||  |||| |  |||||||||||    
T  8988474 aaaggccaagaatggtataagttgaaagatgaactcgcttatgcttttatat 8988423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 8992262 - 8992139
Alignment:
Q  61 cccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 159  Q
    ||||||||||||||||||||||||  | |||| ||||||| ||||  |||||||||| |||  ||||||||| ||||||||||||||||||||||||||     
T  8992262 cccctcaaaaaagtaatttaatattattgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatcttagccaaaaga 8992163  T
Q  160 ccgagaaaggtatgagttgaaaga 183  Q
    | |||||||| ||||||| |||||    
T  8992162 ctgagaaaggcatgagttaaaaga 8992139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 8913078 - 8912989
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatc--gtgtgaaccattggtccacatatcagatattaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||| |||||||| | ||||||||    
T  8913078 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgtgattcattggaccacatattatatattaaa 8912989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 17225653 - 17225743
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgat-aagaacagatactacacttgat 146  Q
    ||||| ||||||||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||||| || |||||||||||||||||||    
T  17225653 tctcctcctcaaaaaagtaatttaatatcgtatgattcattggaccagatatcagttattaaaccgataaaaaacagatactacacttgat 17225743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 6471709 - 6471813
Alignment:
Q  67 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 166  Q
    |||||||||| |||||||| ||||| ||||| | ||  ||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||| ||| ||    
T  6471709 aaaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaa 6471807  T
Q  167 aggtat 172  Q
    ||||||    
T  6471808 aggtat 6471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 35702005 - 35701893
Alignment:
Q  58 ctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaa 157  Q
    |||||||||||||||||||  |||||||||||||    |||| |||||||||| |||||||||  |||| |||| |||| ||||||||||||||||||||    
T  35702005 ctccccctcaaaaaagtaaactaatatcgtgtgacttgttggcccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaa 35701906  T
Q  158 ggccgagaaaggt 170  Q
     |  |||||||||    
T  35701905 agttgagaaaggt 35701893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 17275950 - 17275862
Alignment:
Q  55 tctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacactt 143  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||| |||||||| | | ||| ||| |||||||||  |||||||||||    
T  17275950 tctctccccctcaaaaatgtaattcaatatcgtgtgatccattggaccacatattaaagattgaactgataagaacgtatactacactt 17275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  136 ctacacttgatcttagccaaaaggccgagaaaggta 171  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 50077164 - 50077340
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| |||| |||  ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||    
T  50077164 ccaatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaaca 50077263  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||    
T  50077264 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 50077340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 11652357 - 11652512
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| || | |||  |||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  11652357 ccaatagcaagctattggagtggcttctccccctcaaaaaaataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaaca 11652456  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggg 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11652457 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatggg 11652512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 49106519 - 49106670
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 156  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49106519 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 49106618  T
Q  157 aggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 208  Q
    ||||||||||||||||||||||||||   |||| | | ||||||||||||||    
T  49106619 aggccgagaaaggtatgagttgaaagggtggctggcttctgcttttatatca 49106670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 49108598 - 49108774
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||||||  |||   ||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||| ||||||||||    
T  49108598 ccaatagcaagctactgtgatgacttctccccctcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaaca 49108697  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | | ||| ||||||||||    
T  49108698 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatataggctggcttctgattttatatca 49108774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 3461107 - 3461258
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||| ||||||   ||||||||||||||||||| ||||||||||    
T  3461107 ccaatagcaagctattgaaatggcttctcccccttaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaaca 3461206  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 183  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3461207 gatactacacttgatcttagccaaaaggccgagaaaggtatgaattgaaaga 3461258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 26998729 - 26998846
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 155  Q
    ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26998729 ctctctccctaaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 26998828  T
Q  156 aaggccgagaaaggtatg 173  Q
    ||||||||||||||||||    
T  26998829 aaggccgagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 26984668 - 26984773
Alignment:
Q  68 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 167  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26984668 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 26984767  T
Q  168 ggtatg 173  Q
    ||||||    
T  26984768 ggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 48205943 - 48205832
Alignment:
Q  62 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggcc 161  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||   ||||||||||||||||||||| |||||||| ||||||||    
T  48205943 ccctcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatcttagctaaaaggcc 48205844  T
Q  162 gagaaaggtatg 173  Q
    ||||||||||||    
T  48205843 gagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 21503795 - 21503706
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgat 146  Q
    |||||||||||||||| |||||||||||||||||| | ||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  21503795 tctccccctcaaaaaaataatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 41013548 - 41013651
Alignment:
Q  69 aaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaag 168  Q
    |||| |||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||| ||| || |||| |||||| ||||||||||||||||     
T  41013548 aaaaataatttaataccatgtgaacccttggtccacatatcagatattaaacggataagaacatatattatacttaatcttaaccaaaaggccgagaaaa 41013647  T
Q  169 gtat 172  Q
    ||||    
T  41013648 gtat 41013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 26982646 - 26982549
Alignment:
Q  67 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 166  Q
    |||||| | |||||||||| ||| || ||||| ||||||||| ||||| |||||   ||| ||||||| |||||||||||||||||||| ||||||||||    
T  26982646 aaaaaaatgatttaatatcatgtaaatcattgatccacatattagatactaaac---taataacagatgctacacttgatcttagccaagaggccgagaa 26982550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 49533638 - 49533765
Alignment:
Q  74 taatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 173  Q
    |||||||||||||||||| | ||||    ||||||||||||||||     |||||||||||| | |||||||||||||||||  ||||||||||||||||    
T  49533638 taatttaatatcgtgtgacctattgagtaacatatcagatattaa-----taagaacagata-tgcacttgatcttagccaag-ggccgagaaaggtatg 49533730  T
Q  174 agttgaaagatgggctcgttgctgcttttatatca 208  Q
     |||| || | ||||| | | ||| ||||||||||    
T  49533731 ggttggaataagggctggcttctggttttatatca 49533765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 35806238 - 35806165
Alignment:
Q  65 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatacta 138  Q
    |||||||||||||||||||||||| ||  |||| |   |||||||| ||||||||| |||||||||| ||||||    
T  35806238 tcaaaaaagtaatttaatatcgtgcgactcattagattacatatcatatattaaactgataagaacaaatacta 35806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 54677633 - 54677590
Alignment:
Q  67 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatca 110  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||    
T  54677633 aaaaaagtaatttaatatcgtgtgatccattagaccacatatca 54677590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 34481105 - 34481155
Alignment:
Q  67 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatatta 117  Q
    ||||||||||||||||||| |||| | ||||| | ||||||||||||||||    
T  34481105 aaaaaagtaatttaatatcttgtggatcattgattcacatatcagatatta 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 6431957 - 6432010
Alignment:
Q  114 attaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 167  Q
    |||||||  ||||||| |||||||| || ||||||||||||| |||||||||||    
T  6431957 attaaactaataagaagagatactaaacctgatcttagccaataggccgagaaa 6432010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  133 atactacacttgatcttagccaaaaggccgagaaagg 169  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 10795857 - 10796031
Alignment:
Q  34 aatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacaga 133  Q
    |||||||||||| |||| |||  ||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||||||    
T  10795857 aatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaaactgataagaacaga 10795956  T
Q  134 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||    
T  10795957 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 10796031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 10791619 - 10791793
Alignment:
Q  34 aatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacaga 133  Q
    |||||||||||| |||| |||  ||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||    
T  10791619 aatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacaga 10791718  T
Q  134 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | | | | | ||||||||||||||    
T  10791719 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagttggcttctgcttttatatca 10791793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 30521384 - 30521242
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    ||||||||||||||  | | ||| |||||||||||||||||  |||| ||||||||||||  |  |||||||||||||||||||||||| ||||||||||    
T  30521384 ccaatagcaagctatagtagtggactctccccctcaaaaaataaattgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaaca 30521285  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatga 174  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  30521284 gatactacacttgatctcagccaaaaggtcgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 8875818 - 8875691
Alignment:
Q  47 tgaaatggtctctccccctcaaaaaagta--atttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttg 144  Q
    ||||||||| | || ||||||||||||||  |||||||||||||| | | ||||| |||||||||||||||||||  |||||||||||||| ||||||||    
T  8875818 tgaaatggtttatctccctcaaaaaagtataatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttg 8875719  T
Q  145 atcttagccaaaaggccgagaaaggtat 172  Q
    |||||||||||||||||| |||| ||||    
T  8875718 atcttagccaaaaggccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 13136692 - 13136608
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 120  Q
    ||||||||||||| |||||   ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13136692 tagcaagctactgcaatggctcctccctctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaac 13136608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 11333347 - 11333273
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||    
T  11333347 tctccccctcaaaaaagtaatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 21216131 - 21216032
Alignment:
Q  68 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 167  Q
    |||||||||||||||||  |||||  |||||  |||||||| ||||||||||| |||||||| |||| ||| || ||||||||| |||||| || |||||    
T  21216131 aaaaagtaatttaatattttgtgattcattgagccacatataagatattaaactgataagaatagatgctatacatgatcttagtcaaaagaccaagaaa 21216032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 41841117 - 41841292
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| ||   |||  ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  41841117 ccaatagcaagctattggggtggcttctccccatcaaaaaagtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaaca 41841216  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||    
T  41841217 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggttggcttctgcttttatatc 41841292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 40054454 - 40054312
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||    
T  40054454 ccaatagcaagctattgaagtggcctctccccctcaaaaaagtaatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaaca 40054355  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatga 174  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40054354 gatactacacttgatcttagccaaaaggccgagaaaggtatga 40054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 10944368 - 10944550
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 135  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  10944368 tagcaagctactaaaatggcttctccccatcaaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagata 10944467  T
Q  136 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctc 219  Q
    |||||||||||||||||||||||| |||||||||||||||||  || ||| ||||  |  |||||||||||| |||||||||||    
T  10944468 ctacacttgatcttagccaaaaggtcgagaaaggtatgagttacaacatgagctc-ctattgcttttatatctgacatgttctc 10944550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 44879100 - 44878950
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 156  Q
    ||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44879100 tctccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 44879001  T
Q  157 aggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatc 207  Q
    |||||||||||||||||||||||| | ||||||||   |||||||||||||    
T  44879000 aggccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatatc 44878950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 57 - 207
Target Start/End: Original strand, 44880821 - 44880971
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 156  Q
    ||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44880821 tctccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 44880920  T
Q  157 aggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatc 207  Q
    |||||||||||||||||||||||| | ||||||||   |||||||||||||    
T  44880921 aggccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatatc 44880971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 37679897 - 37679757
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    ||||||||||||||| |   ||| ||||||||||||| |||  |||||||||||  ||| |||||||| |||||||||||||||||||| ||||||||||    
T  37679897 ccaatagcaagctaccgtggtggcctctccccctcaataaataaatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaaca 37679798  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtat 172  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37679797 gatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 37682156 - 37682057
Alignment:
Q  75 aatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 174  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 42555053 - 42555198
Alignment:
Q  38 gcaagctactgaaatggtctctccccctcaaaaaag-taatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatac 136  Q
    |||||||||||| ||||  ||| ||| ||||||||  ||||||||||||||||||  |||||  |||||||||| ||||||||| ||||| ||||||| |    
T  42555053 gcaagctactgagatggcttcttcccttcaaaaaacataatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattc 42555152  T
Q  137 tacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 182  Q
    | ||||||||||||||||||||  | ||||||||||||||||||||    
T  42555153 tgcacttgatcttagccaaaagatcaagaaaggtatgagttgaaag 42555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 44582970 - 44582870
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 156  Q
    |||| |||||||||||||||||||||||| |   | ||||||  | |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44582970 tctctccctcaaaaaagtaatttaatatcatagaatccattgagctacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 44582871  T
Q  157 a 157  Q
    |    
T  44582870 a 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 101 - 207
Target Start/End: Original strand, 42220880 - 42220985
Alignment:
Q  101 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgctt 200  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||| |  |||||   ||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgctt 42220978  T
Q  201 ttatatc 207  Q
    |||||||    
T  42220979 ttatatc 42220985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 42872514 - 42872564
Alignment:
Q  131 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 181  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagttgaaa 42872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 42092093 - 42092010
Alignment:
Q  101 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatg 185  Q
    |||||||||||||||||||| |||||||||| ||| ||||||| || |||| ||||||||  ||||||||||||||| |||||||    
T  42092093 ccacatatcagatattaaactgataagaacaaatattacacttaattttag-caaaaggcaaagaaaggtatgagtttaaagatg 42092010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 42554632 - 42554709
Alignment:
Q  37 agcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagata 114  Q
    ||||| ||||||| ||||  |||||||||||||||| |||||||||||||||| |  |||||  ||||||||||||||    
T  42554632 agcaaactactgagatggcttctccccctcaaaaaaataatttaatatcgtgtaattcattgacccacatatcagata 42554709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 44583162 - 44583111
Alignment:
Q  68 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 120  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  44583162 aaaaagtaatttaatatcgtgtgtaccatt-gttcacatatcagatattaaac 44583111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 7525086 - 7524961
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 155  Q
    |||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7525086 ctctccccctcaaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 7524987  T
Q  156 aaggccgagaaaggtatgagttgaaa 181  Q
    ||||||||||||||||||| ||||||    
T  7524986 aaggccgagaaaggtatgacttgaaa 7524961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 3643782 - 3643640
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    |||||||||||||| ||  || || ||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||    
T  3643782 ccaatagcaagctattgtgatagtttctcccccttaaaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaaca 3643683  T
Q  132 gatactacacttgatcttagccaaaaggccgagaaaggtatga 174  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3643682 gatactacacttgatcttagccaaaaggccgagaaaggtatga 3643640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 1716441 - 1716570
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccatt-ggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 155  Q
    ||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1716441 tctcccccttaaaaaagtaatttaatatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 1716540  T
Q  156 aaggccgagaaaggtatgagttgaaagatg 185  Q
    |||||||||||||||||||||| |||||||    
T  1716541 aaggccgagaaaggtatgagttaaaagatg 1716570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 4103363 - 4103249
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 155  Q
    ||||| |||| ||||||| |||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  4103363 ctctctccctaaaaaaagcaatttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaa 4103264  T
Q  156 aaggccgagaaaggt 170  Q
    || || |||||||||    
T  4103263 aatgctgagaaaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 5350781 - 5350672
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 131  Q
    ||||||||||||||||    ||| |||| |||||||| |||  |||||||||||||||| |||||||  |||||||||||||||||||| ||||| || |    
T  5350781 ccaatagcaagctactttggtggactctacccctcaagaaataaatttaatatcgtgtggaccattgtcccacatatcagatattaaactgataacaata 5350682  T
Q  132 gatactacac 141  Q
    ||||||||||    
T  5350681 gatactacac 5350672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 16037966 - 16037861
Alignment:
Q  65 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgag 164  Q
    ||||||||||||||||||||||| ||| ||||| | |||| ||||| |||||||    ||||||||| |||||||||||||||||||  ||| |||||||    
T  16037966 tcaaaaaagtaatttaatatcgtttgacccattagaccac-tatcaaatattaagataataagaacaaatactacacttgatcttag-aaaacggccgag 16037869  T
Q  165 aaaggtat 172  Q
    ||| ||||    
T  16037868 aaaagtat 16037861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 13636430 - 13636366
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 120  Q
    ||||||||||||| ||  |||||||||| |||||| ||| ||| |||||||||||||||||||||    
T  13636430 ctctccccctcaagaacttaatttaataccgtgtggaccgttgatccacatatcagatattaaac 13636366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 19261152 - 19261216
Alignment:
Q  103 acatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 167  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||  |||||||| ||||||    
T  19261152 acatatcagatatttaacggataagaacatatattacacttgatcttaatcaaaaggctgagaaa 19261216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 27134628 - 27134511
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 156  Q
    ||||||||||||||||||||||||||||||| |||  |||| | ||||||||||||||||||||| |||||||||||||||| | ||||||||||  |||    
T  27134628 tctccccctcaaaaaagtaatttaatatcgtttgactcattagaccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaa 27134529  T
Q  157 aggccgagaaaggtatga 174  Q
    ||||||| ||||||||||    
T  27134528 aggccgaaaaaggtatga 27134511  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 8128260 - 8128149
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 155  Q
    ||||||||||||| |||  |||||||||| |||||| ||||||| |||||||||| |||||||||  | ||||||| ||||||||||| |||||| ||||    
T  8128260 ctctccccctcaagaaataaatttaatattgtgtga-ccattggcccacatatcatatattaaactaaaaagaacatatactacacttaatcttaaccaa 8128162  T
Q  156 aaggccgagaaag 168  Q
    |||  ||||||||    
T  8128161 aagaacgagaaag 8128149  T

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Target: scaffold0549 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 5538 - 5450
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 120  Q
    |||||||||||||| ||   ||| |||||| ||||||||||  ||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  5538 ccaatagcaagctattgtggtggactctccacctcaaaaaataaatttaatatcgtgtgaacaattggcccatatatcagatattaaac 5450  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  126 agaacagatactacacttgatcttagccaaaaggccgagaaaggtat 172  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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