View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_low_3 (Length: 479)
Name: NF11465_low_3
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 21054575 - 21055031
Alignment:
| Q |
18 |
tatacttccatggcggttgatctatacgaagaaggtaagatagatgaggctgataaagttatcattgaaatgaaagacagacgttttaaaccaaaacatt |
117 |
Q |
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| T |
21054575 |
tatacttccatggcggttgatctatacgaagaaggtaagatagatgaggctgataaagttatcattgaaatgaaagacagacgttttaaaccaaaacatt |
21054674 |
T |
|
| Q |
118 |
ttatttttgaggcaaaggtagctgctttgtgtaaggttggtaaagtagatgaagcaatcaaggtaattgaagaggacatggtggaagtcaattgtctacc |
217 |
Q |
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| T |
21054675 |
ctatttttgaggcaaaggtagctgctttgtgtaaggttggtaaagtagatgaagcaatcaaggtaattgaagaggacatggtggaagtcaattgtctacc |
21054774 |
T |
|
| Q |
218 |
aaatgctacagtgtatactattctcttgaaaaacctgggtggtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaat |
317 |
Q |
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| T |
21054775 |
aaatgctacagtgtatactattctcttgaaaaacctgggtggtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaat |
21054874 |
T |
|
| Q |
318 |
tgcatggccgacaaagaaacttattgcattttactagaaatgctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaatta |
417 |
Q |
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| T |
21054875 |
tgcatggctgacaaagaaacttattgcattttactagaaatgctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaatta |
21054974 |
T |
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| Q |
418 |
aatcatattggccttgtgccaatacttacaattcgctcattgagggtctctgctcct |
474 |
Q |
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| T |
21054975 |
aatcatattggccttgtgccaatacttacaatttgctcattgagggtctttgctcct |
21055031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 26367346 - 26366898
Alignment:
| Q |
18 |
tatacttccatggcggttgatctatacgaagaaggtaagatagatgaggctgataaagttatcattgaaatgaaagacagacgttttaaaccaaaacatt |
117 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |
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| T |
26367346 |
tatacttccatggcagttgatctatacgaagaaggtaagatagatgaggctgataaagttattattgaaatgaaagacagacgctttagaccaaaacatt |
26367247 |
T |
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| Q |
118 |
ttatttttgaggcaaaggtagctgctttgtgtaaggttggtaaagtagatgaagcaatcaaggtaattgaagaggacatggtggaagtcaattgtctacc |
217 |
Q |
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|||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26367246 |
ctatttttgaggcaaaggtagctgcattgtgcaaggttgggaaggtagatgaagcaatcaaggtaattgaagaggacatggtggaagtcaattgtctgcc |
26367147 |
T |
|
| Q |
218 |
aaatgctacagtgtatactattctcttgaaaaacctgggtggtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaat |
317 |
Q |
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||||||| ||||||||||||||||||||||||| | || ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||| |
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| T |
26367146 |
taatgctagagtgtatactattctcttgaaaaacatacgtagtgtaggaaattcgacgtcggtgctcgaaagcttgaacaagatgtcgaaaaaggtaaat |
26367047 |
T |
|
| Q |
318 |
tgcatggccgacaaagaaacttattgcattttactagaaatgctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaatta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
26367046 |
tgcatggccgacaaagaaacttattgcattttactagaaatgctttgtcgcgagggaaagtatcttcaggcaagccaacttttggaacaaatgtcaatta |
26366947 |
T |
|
| Q |
418 |
aatcatattggccttgtgccaatacttacaattcgctcattgagggtct |
466 |
Q |
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||||||||||||||| ||| || | |||||||| ||||||||||||||| |
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| T |
26366946 |
aatcatattggccttctgcaaacagttacaatttgctcattgagggtct |
26366898 |
T |
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