View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_low_4 (Length: 465)
Name: NF11465_low_4
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 55061114 - 55060741
Alignment:
| Q |
4 |
gagagatgaacttgaagaatctggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacctttt-at |
102 |
Q |
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| T |
55061114 |
gagaaatgaacttgaagaatctggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacctttttat |
55061015 |
T |
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| Q |
103 |
agcgataattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgttactaaagataaacttgttgttgtcagagatccttttggtttt |
202 |
Q |
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| T |
55061014 |
agcgagaattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgttactgaagataaactttttgttgtcagagatccttttggtttt |
55060915 |
T |
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| Q |
203 |
cgacctctggttatgggaagaagaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggttt |
302 |
Q |
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| T |
55060914 |
cgacctctggttatgggaagaagaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggttt |
55060815 |
T |
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| Q |
303 |
gtcctggtgagattgtggttgtggataaaagtggtgttcaatctcattgtcttgtttctcgtccagaaccaaaa |
376 |
Q |
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| T |
55060814 |
atcctggtgagattgtggttgtggataaaagtggtgttcaatctcattgtcttgtttctcgtccagaaccaaaa |
55060741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 26 - 313
Target Start/End: Complemental strand, 27357275 - 27356988
Alignment:
| Q |
26 |
ggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagaccttttatagcgataattgttgaagcgtgtg |
125 |
Q |
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| T |
27357275 |
ggttcgatttttaacactacttctgatactgaagttgttcttcatttgattgctacttcaaagcatagaccttttattttaagaattgttgatgcatgtg |
27357176 |
T |
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| Q |
126 |
aaaaagttaaaggtgcttattcaattgtgtttgttactaaagataaacttgttgttgtcagagatccttttggttttcgacctctggttatgggaagaag |
225 |
Q |
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| T |
27357175 |
agaagcttgaaggtgcttattcgattgtgtttgttactgaggataagcttgttgctgtgagggatccatttgggtttaggcctttggttatggggaggag |
27357076 |
T |
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| Q |
226 |
aagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggtttgtcctggtgag |
313 |
Q |
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| T |
27357075 |
aagtaatggtgctgttgtttttgcttctgagacttgtgctcttgatttgattgaagctacttatgagagggaagttttccctggtgag |
27356988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 44334166 - 44334066
Alignment:
| Q |
153 |
tgtttgttactaaagataaac---ttgttgttgtcagag-atccttttggttttcgacctctggttatgggaagaagaagtaatagttctgttgtttttg |
248 |
Q |
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||||||||||| ||||||||| |||||| | |||||| |||||||| ||||||||||| |||||||| |||| || ||||| ||||||| ||||||| |
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| T |
44334166 |
tgtttgttactgaagataaacaacttgttgctatcagaggatcctttttgttttcgacctttggttatgtgaagtagtagtaacggttctgtagtttttg |
44334067 |
T |
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| Q |
249 |
c |
249 |
Q |
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| T |
44334066 |
c |
44334066 |
T |
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