View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_low_7 (Length: 417)
Name: NF11465_low_7
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 4838560 - 4838946
Alignment:
| Q |
20 |
ctatagtaatatagcaactgtaattagttgttaccatgtcgaggagcacatgaaaaccatagaatagaggacaggagagacagctaagaagagctgcact |
119 |
Q |
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| T |
4838560 |
ctatagtaatatagcaactgtaattagttgttgccatgtcgaggagcacatgaaaaccatagaatagaggacaggagagacagctaagaagagctgcact |
4838659 |
T |
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| Q |
120 |
gcacatatatttatggactctgcatgactacttttcaactctcattttcgaccacatcactgttcatcttcctcctctagactctatgtgctctgtcctt |
219 |
Q |
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| T |
4838660 |
gcacatatatttatgggctctgcatgactacttttcaactctcattttcgaccacatcactgttcatcttcctcctctagactctatgtgctctgtcctt |
4838759 |
T |
|
| Q |
220 |
cattcactggcctggtccccacttcaagttgctctaagttggagaaatttgaaaaaagaaattcaaagtcttaaattatcaagtgtagttaagtttttta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4838760 |
cattcactggcctggtccccacttcaagttgctctaagttggagaaatttgaaaaaagaaattcaaagtcttaaattatcaagtgtagttaagtttttta |
4838859 |
T |
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| Q |
320 |
aacactaagtttgtagagaaagactctggtttgatccctacagacacattattaagaaggtgagaaaagttttaaacttcaacctatg |
407 |
Q |
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| T |
4838860 |
aacactaagtttgtagagaaagactctggtttgatccctacagacacattattaagaaggtgagaaaag-tttaaacttcaacctatg |
4838946 |
T |
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