View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11465_low_9 (Length: 372)
Name: NF11465_low_9
Description: NF11465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11465_low_9 |
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| [»] scaffold0365 (1 HSPs) |
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| [»] scaffold0400 (1 HSPs) |
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Alignment Details
Target: scaffold0365 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 364
Target Start/End: Complemental strand, 2850 - 2492
Alignment:
| Q |
6 |
ttcttttcttccaagaatatctcttcctctctcagaatcaaattgtaaacagctcccatcctcgaaatagaattcaaccacaaacccggcttaccatttc |
105 |
Q |
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| T |
2850 |
ttcttttcttccaagaatatctcttcctctctcagaatcaaattgtaaacagctcccatcctcgaaatagaattcaaccacaaacccggcttaccatttc |
2751 |
T |
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| Q |
106 |
cgggccaaacagcaccaaaattgttccctttaaactcaagcctaccatcaaagttctcaaacaacatatcttgaaaaccaaaaagctgatcacaaaaatc |
205 |
Q |
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| T |
2750 |
ccggccaaacagcaccaaaattgttccctttaaactcaagcctaccatcaaagttctcaaacaacatatcttgaaaaccaaaaagctgatcacaaaaatc |
2651 |
T |
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| Q |
206 |
agccatagtcatcataacaaaaaccgcgacaaccctcctcgaaagcttcacatcttcacctgtacgaatatgcttcacttttatcccatcagcaggaaca |
305 |
Q |
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| T |
2650 |
agccatagtcatcataacaaaaaccgcgacaaccctcctcgaaagcttcacatcttcacctgtacgaatatgcttcacttttatcccatcagcaggaaca |
2551 |
T |
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| Q |
306 |
agaccttgcaatttcttcctccaactttcatccttattaaatatccccttctcctttgc |
364 |
Q |
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| T |
2550 |
agaccttgcaatttcttcctccaactttcatccttattaaatatccccttctcctttgc |
2492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 2206 - 1965
Alignment:
| Q |
6 |
ttcttttcttccaagaatatctcttcctctctcagaatcaaattgtaaacagctcccatcctcgaaatagaattcaaccacaaacccggcttaccatttc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2206 |
ttcttttcttccaagaatatctcttcctctctcagaatcaaattgtaaacagctcccatcctcgaaatagaattcaaccacaaacccggcttaccatttc |
2107 |
T |
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| Q |
106 |
cgggccaaacagcaccaaaattgttccctttaaactcaagcctaccatcaaagttctcaaacaacatatcttgaaaaccaaaaagctgatcacaaaaatc |
205 |
Q |
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| T |
2106 |
ccggccaaacagcaccaaaattgttccctttaaactcaagcctaccatcaaagttctcaaacaacatatcttgaaaaccaaaaagctgatcacaaaaatc |
2007 |
T |
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| Q |
206 |
agccatagtcatcataacaaaaaccgcgacaaccctcctcga |
247 |
Q |
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| T |
2006 |
agccatagtcatcataacaaaaaccgcgacaaccctcctcga |
1965 |
T |
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