View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_high_1 (Length: 817)
Name: NF11466_high_1
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 11 - 800
Target Start/End: Original strand, 1984434 - 1985226
Alignment:
| Q |
11 |
caaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgttt |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
1984434 |
caaaggtcccgatccaaccgatgattcgtatgcaaccaagtttcgaagaaaaacttcggtgttgacatccaaactaattgtgggaaggtgaaaagtgttt |
1984533 |
T |
|
| Q |
111 |
gttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcct |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
1984534 |
gttttagcatcaaaactaatgcttgatatgcttccttttgcaggtaagaaattaacccctgcagtcacaagttgttcaacagaaggaatagcgatttcct |
1984633 |
T |
|
| Q |
211 |
ccaccaagggtgttttgttctttagagtacttgagttgtcatcgtttggtttttcctcttctttcttttgagagtttaacaagtgttcaataggttgttt |
310 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |
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| T |
1984634 |
ccaccaagggtgttttgttctttagagtactagagttttcatcttttggtttttcctcttctttcttttgagtgtttaaaaagtattcaataggttgttt |
1984733 |
T |
|
| Q |
311 |
tacaagtttgatacctggaaggtttgttatgttttcccaaggtaattttttaaggacttttagaggtgcagatataagtacctttttaattccatgcaaa |
410 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1984734 |
tacaagtttgattcctggaaggttggttatgttttcccaaggtaactttttaaggacttttagaggtgcagatataagtacctttttgattccatgcaaa |
1984833 |
T |
|
| Q |
411 |
ggccctttgattagctttgaaagaaatttccaaagtatactcaaaaatttcttaacatggatggaatcattagttgatgaattttcatctccttcttgtt |
510 |
Q |
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| T |
1984834 |
ggccctttgattatctttgaaagaaatttccaaagtatactcaaaaatttcttaacatggatggaatcattagttgatgatttttcatctccttcttgtt |
1984933 |
T |
|
| Q |
511 |
gatccacttcttgttgaatctcaacttcaatgatgtcatgttgtttttctaattttggcacaatcatgtcatacaaaaaatcaagcaaatgtgcactttc |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
1984934 |
gatccacttcttgttgaatctcaacttcaatgatgtcatgttgtttttctaattttggcacaatcatgtcatacaaaaaatctagcaaatgtgcacactc |
1985033 |
T |
|
| Q |
611 |
atagactttaatgcttggaaacttttcaatcatcttgaaaggtgaagtttgttttaacaaacctataaacatgaaaatcaacatttcatcagcagcttct |
710 |
Q |
| |
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|||||| |||| | ||| ||| ||||| |||||| || |||||| | | ||| ||||| | |||| |||| || ||||||| ||||||||| |||| |
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| T |
1985034 |
taagacttgaatgttaggatactcttcaaacatcttaaagggtgaaatctctttaaacaaccttatacacatcaatatcaacacatcatcagcattttct |
1985133 |
T |
|
| Q |
711 |
tttgatg---agagtttgaactcaagcaattttctcaaaaccattaatggaatttgattctcaagcataacaatgtctttcaacattgcatta |
800 |
Q |
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| T |
1985134 |
tctgatgaaaagaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctcaaaattgcatta |
1985226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 556 - 802
Target Start/End: Original strand, 1978064 - 1978310
Alignment:
| Q |
556 |
tttctaattttggcacaatcatgtcatacaaaaaatcaagcaaatgtgcactttcatagactttaatgcttggaaacttttcaatcatcttgaaaggtga |
655 |
Q |
| |
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|||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1978064 |
tttctaatttaggcacaatcatgtcgtaaaaaaaatcaagcaaatgtgcactttcggagactttaatgcttggaaacttttcaatcatcttgaaaggtga |
1978163 |
T |
|
| Q |
656 |
agtttgttttaacaaacctataaacatgaaaatcaacatttcatcagcagcttcttttgatgagagtttgaactcaagcaattttctcaaaaccattaat |
755 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1978164 |
agtttgtttaaacaaacctataaacatgaaaatcaacatttcatcagcagcttcttttgatgagagtttgaactcaagcaattttctcaaaaccattaat |
1978263 |
T |
|
| Q |
756 |
ggaatttgattctcaagcataacaatgtctttcaacattgcattatg |
802 |
Q |
| |
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| T |
1978264 |
ggaatttgattctcaagcataacaatgtctttcaacattgcattatg |
1978310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 556 - 802
Target Start/End: Complemental strand, 1948342 - 1948096
Alignment:
| Q |
556 |
tttctaattttggcacaatcatgtcatacaaaaaatcaagcaaatgtgcactttcatagactttaatgcttggaaacttttcaatcatcttgaaaggtga |
655 |
Q |
| |
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|||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1948342 |
tttctaatttaggcacaatcatgtcgtaaaaaaaatcaagcaaatgtgcactttcggagactttaatgcttggaaactcttcaatcatcttgaaaggtga |
1948243 |
T |
|
| Q |
656 |
agtttgttttaacaaacctataaacatgaaaatcaacatttcatcagcagcttcttttgatgagagtttgaactcaagcaattttctcaaaaccattaat |
755 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||| |
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| T |
1948242 |
agtttgtttaaacaaacctataaacatgaaaatcaacatttcatcagcagcttcttttgacgagaatttgaactcaagcaattttctcaaaacaaataac |
1948143 |
T |
|
| Q |
756 |
ggaatttgattctcaagcataacaatgtctttcaacattgcattatg |
802 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||||| |||||||| |
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| T |
1948142 |
ggaatttgattctcgagcataacaatgtctctcaacatcgcattatg |
1948096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 1977513 - 1977724
Alignment:
| Q |
11 |
caaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1977513 |
caaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgttt |
1977612 |
T |
|
| Q |
111 |
gttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcct |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||| |||||| | |
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| T |
1977613 |
gttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcat |
1977712 |
T |
|
| Q |
211 |
ccaccaagggtg |
222 |
Q |
| |
|
||| ||| |||| |
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|
| T |
1977713 |
ccatcaaaggtg |
1977724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 1948889 - 1948696
Alignment:
| Q |
15 |
ggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgtttgttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | || || ||||||| |||||| |||||| |
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| T |
1948889 |
ggtcccgatccaaccgatgattcatacgcaaccaagtttcttagaaaaacttcggtattaacatccaaaccgataataggaaggtaaaaagttcttgttt |
1948790 |
T |
|
| Q |
115 |
tagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttc |
208 |
Q |
| |
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| |||||||||||||| ||||||||||| ||||| ||||| | ||||| || || | ||||||||| || ||||||||||||||||||||| |
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| T |
1948789 |
ttgcatcaaaactaatacttgatatgctcccattagtaggagaaaaattcactcctgatttcacaagttctttaacagaaggaatagtgatttc |
1948696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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