View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11466_high_10 (Length: 505)
Name: NF11466_high_10
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 36685144 - 36684668
Alignment:
| Q |
19 |
aatacggtttctaaatccgataagagagtttgtgaaaagatcacaaccttgaagatagtccaaacttggcaacnnnnnnnnnnnnntcgcggagcagttg |
118 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36685144 |
aatacggtttctaagttcgacaagagagtttgtgaaaagatcacaaccttgaagatagtccaaacttggcaacaaaaagaaaaaaatcgcggagcagttg |
36685045 |
T |
|
| Q |
119 |
ccctctaaactatcactctaatttttatttgtaatcggactttt-caatataattagtctttaaactatttttaattcattagtatagtttcagaactat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36685044 |
ccctctaaactatcactctaatttttatttgcaatcggactttttcaatataattagtctttaaactatttttaattcattagtatagtttcagaactat |
36684945 |
T |
|
| Q |
218 |
cattttctcttctatatttaaagcagcaaagggactaacttaatgagccgtgatggtttagatcgatattaaaagaagatttaaaaaagtctataaaaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684944 |
cattttctcttctatatttaaagcagcaaagggactaacttaatgagccgtgatagtttagatcgatattaaaagaagatttaaaaaagtctataaaaca |
36684845 |
T |
|
| Q |
318 |
caaattaaattctctacatttggctttacgatgcagaagaccccgttagattatagaggatctctcataatcttaaaaaatttctctcttaatcgaacag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36684844 |
caaattaaattctctacatttggctttacgatgcagaagaccccgttagattatagaggatctctcataatcttaaaaattttctctcttaatcgaacag |
36684745 |
T |
|
| Q |
418 |
tccaaagccatctagcttcccaatgaaattgtggtaaaggatttgggttgtataaaaaagtgttacccttcatctca |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684744 |
tccaaagccatctagcttcccaatgaaattgtggtaaaggatttgggttgtataaaaaagtgttacccttcatctca |
36684668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University