View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_high_14 (Length: 373)
Name: NF11466_high_14
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 34997543 - 34997187
Alignment:
| Q |
1 |
gctcatcatctgtttgtgataagtttctttggtgaagaaggtacgaaggtgagggagtgggaatagtgagaatcagtaatgatacaactctcctactttg |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34997543 |
gctcatcctctgtttgtgataagtttctttggtgaagaaggtacgaaggtgagggagtgggaatagtgagaatcagtaatgatacaactctcctactttg |
34997444 |
T |
|
| Q |
101 |
caaatctcatctcattcaatcaaaacccttttctttaatcttccatagattcaatcttttcctctctccaatccttaaattcaannnnnnnncatccgga |
200 |
Q |
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| T |
34997443 |
tacatctcatctcattcaatcaaaacccttttctttaatcttccagagattcaatcttttcctctgtccaatcctcaaattcaattttttttcatccggg |
34997344 |
T |
|
| Q |
201 |
tttttcttcaattagataaagatttgattttgttgttgagaagttacatcaaatcaactcaaatgaagtgatataattggagagaggtttggaagtggat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34997343 |
tttttcttcaattagataaagatttgattttgttgttgagaagttacaacaaatcaactcaaatgaagtgatataattggagagaggtttggaagtggat |
34997244 |
T |
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| Q |
301 |
atggatctgatttgataaagttgaaaaagaagtgaaacttgggtgtgatttaattga |
357 |
Q |
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| T |
34997243 |
atggatctgatttgataaagttgaaaaagaagtgaaacttgggtgtgatttaattga |
34997187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 24196264 - 24196620
Alignment:
| Q |
1 |
gctcatcatctgtttgtgataagtttctttggtgaagaaggtacgaaggtgagggagtgggaatagtgagaatcagtaatgatacaactctcctactttg |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24196264 |
gctcatcctctgtttgtgataagtttctttggtgaagaaggtacgaaggtgagggagtgggaatagtgagaatcagtaatgatacaactctcctactttg |
24196363 |
T |
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| Q |
101 |
caaatctcatctcattcaatcaaaacccttttctttaatcttccatagattcaatcttttcctctctccaatccttaaattcaannnnnnnncatccgga |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
24196364 |
cacatctcatctcattcaatcaaaacccttttctttaatctttcagagattcaatcttttcctctctccaatccttaaaatcaattttttttcatccggg |
24196463 |
T |
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| Q |
201 |
tttttcttcaattagataaagatttgattttgttgttgagaagttacatcaaatcaactcaaatgaagtgatataattggagagaggtttggaagtggat |
300 |
Q |
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| T |
24196464 |
tttttcctcaattagataaagatttgattttgccgttgagaagttacaacaaatcaactcaaatgaagtgatataattggagagaggtttggaagtggat |
24196563 |
T |
|
| Q |
301 |
atggatctgatttgataaagttgaaaaagaagtgaaacttgggtgtgatttaattga |
357 |
Q |
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| T |
24196564 |
atggatctgatttgacaaagttgaaaaagaagtgaaacttgagtgtgatttaattga |
24196620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 41694395 - 41694457
Alignment:
| Q |
295 |
gtggatatggatctgatttgataaagttgaaaaagaagtgaaacttgggtgtgatttaattga |
357 |
Q |
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| T |
41694395 |
gtggatctggatctgatttgataaagttgaaaaagaagcaaaaattgggtgtgatttaattga |
41694457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 41694224 - 41694336
Alignment:
| Q |
156 |
cttttcctctctccaatccttaaattcaannnnnnnncatccggatttttcttcaattagataaagatttgattttgttgttgagaagttacatcaaatc |
255 |
Q |
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|||||||||||||||||||||||| |||| ||| || |||||||| ||| ||||||||| |||||||| |||||||||| | || | |||| |
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| T |
41694224 |
cttttcctctctccaatccttaaaatcaattttttttcatttgggtttttctttaatctgataaagatctgattttgctgttgagaagctgcaacgaatc |
41694323 |
T |
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| Q |
256 |
aactcaaatgaag |
268 |
Q |
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||||||||||||| |
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| T |
41694324 |
aactcaaatgaag |
41694336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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