View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11466_high_19 (Length: 317)
Name: NF11466_high_19
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 35165733 - 35165416
Alignment:
| Q |
1 |
gcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatgaggaaa---------- |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35165733 |
gcatgaagataagtacatgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatgaggagattattttgaa |
35165634 |
T |
|
| Q |
91 |
------gacaaaag-------aaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacaagattttgagtactgtagggacattc-ttt |
176 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |
|
|
| T |
35165633 |
gcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttgagtactgtatggacattctttt |
35165534 |
T |
|
| Q |
177 |
tgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtcttactatgggaaacaaccaaaac |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35165533 |
tgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtcttactatgggaaacaaccaaaac |
35165434 |
T |
|
| Q |
277 |
gtaatggaaatgatatgt |
294 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35165433 |
gtaatggaaatgatatgt |
35165416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 88 - 294
Target Start/End: Original strand, 44792008 - 44792215
Alignment:
| Q |
88 |
aaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacaagattttgagtactgtagggacattcttttgagtgtgttt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44792008 |
aaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttgagtactgtagggacattcttttgagtgtgttt |
44792107 |
T |
|
| Q |
188 |
gatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtcttactatgggaaacaacc-aaaacgtaatggaaa |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44792108 |
gatcaaattatatagaagatatgttaaaacacaagagtttaattgtaatggaaatcaaattcggtcttactatgggaaacaaccaaaaacgtaatggaaa |
44792207 |
T |
|
| Q |
287 |
tgatatgt |
294 |
Q |
| |
|
|||||||| |
|
|
| T |
44792208 |
tgatatgt |
44792215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44791884 - 44791967
Alignment:
| Q |
1 |
gcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatg |
84 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44791884 |
gcatgaagataagtacgtgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatg |
44791967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University