View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_high_2 (Length: 703)
Name: NF11466_high_2
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Original strand, 38891696 - 38892403
Alignment:
| Q |
1 |
gaaaagaaaagaaaaagttccatagaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatata--gtcccaaccttcc |
98 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
38891696 |
gaaaagaaaagaaaaaattccatacaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatatatagtcccaacctccc |
38891795 |
T |
|
| Q |
99 |
ttttcctttataatac---gtaatgtgagacttcttcaacatatatttttcaactaataccaacaatcttcatctccattgaaaatggtacatatactgt |
195 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38891796 |
ttttcctttataatactaggtaatgtgagacttcttcaacatatatttttcaactaacaccaacaatcttcatctccattgaaaatggtacatatattgt |
38891895 |
T |
|
| Q |
196 |
cattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatgaactttcacatgt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38891896 |
cattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatgaactttcacatgt |
38891995 |
T |
|
| Q |
296 |
tgaaaattagtttgaaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgcatcaatttcaatca |
395 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38891996 |
cgaaaattagtttgaaaacttatggtgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgcatcaatttcaatca |
38892095 |
T |
|
| Q |
396 |
atgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaagccaaaaaatgattcttccatcaattc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892096 |
atgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaagccaaaaaatgattcttccatcaattc |
38892195 |
T |
|
| Q |
496 |
tctctcgtccaaacttcacaacgaaacttgtgattgtaattgtatccataccacaactatgcactagagaagttcccaataaagagaggtcaagtcacaa |
595 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38892196 |
tctctcgtccaaacttcacaacggaacttgtgattgtaattgtatccataccacaactatgcactagagaagttcctaataaagagaggtcaagtcacaa |
38892295 |
T |
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| Q |
596 |
tggacttgtctaagtaccaagtctttccaagctagaaccctccaaaacaacacttccaaaccaaaagctcttatattagttgttgggtggtctgaaggag |
695 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892296 |
tggactcgtctaagtaccaagtctttcctagctagaaccttccaaaacaacacttccaaaccaaaagctcttatattagttgttgggtggtctgaaggag |
38892395 |
T |
|
| Q |
696 |
cactgaaa |
703 |
Q |
| |
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||| |||| |
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| T |
38892396 |
cacggaaa |
38892403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 362 - 446
Target Start/End: Original strand, 31795644 - 31795729
Alignment:
| Q |
362 |
taatctcaca-cacactttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacat |
446 |
Q |
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|||||||||| ||||||||| |||||| |||| ||||| | |||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
31795644 |
taatctcacaacacactttgtatcaatgtcaaccaatgcgcgtgtactaatcaacaccttgtgtaatcttgattgtatcaacacat |
31795729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 29392552 - 29392515
Alignment:
| Q |
237 |
atccaccataaagagtatattttacttgaagttaaacc |
274 |
Q |
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| T |
29392552 |
atccaccataaagggtatactttacttgaagttaaacc |
29392515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 22189749 - 22189825
Alignment:
| Q |
261 |
cttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttga |
337 |
Q |
| |
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|||| |||||||||||| || ||| |||||||| | |||||| || ||||||||||| | ||| |||||||||||| |
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| T |
22189749 |
cttgtagttaaaccacttcaagaattttcacatatcgaaaatgaggttgaaaacttaaggagcaacttccatgttga |
22189825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 211 - 397
Target Start/End: Original strand, 34981081 - 34981268
Alignment:
| Q |
211 |
caatcatcattcaaaa-aactatcataatccaccataaagagtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttg |
309 |
Q |
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||||||| ||||||| |||||||||| |||| |||||| | |||| || ||| ||| ||||||||||||| || |||||||||| ||||| | | |
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| T |
34981081 |
caatcatagttcaaaagaactatcatactccatcataaaaaatatacttcactcgaatttaaaccactccaataattttcacatgtcaaaaatcatgcta |
34981180 |
T |
|
| Q |
310 |
aaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgcatcaatttcaatcaat |
397 |
Q |
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||||||||| |||| ||||||| ||| ||||||| | ||||| | || |||||||| ||||||||||||||||| ||||||||| |
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| T |
34981181 |
aaaacttatcgtgcaacttccatattggttgaaaactcttcaaccactgacataatctcaaacacactttgcatcaatgtcaatcaat |
34981268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 16388197 - 16388148
Alignment:
| Q |
230 |
tatcataatccaccataaagagtatattttacttgaagttaaaccactcca |
280 |
Q |
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| T |
16388197 |
tatcatactccaccataaagagtata-atcacttgaagttaaaccactcca |
16388148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 2615158 - 2615244
Alignment:
| Q |
250 |
agtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg |
336 |
Q |
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|||||| |||||||||||||||| ||||||| ||| ||| ||||||||||||| | ||||||||||| ||||| ||| ||||||| |
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| T |
2615158 |
agtatactttacttgaagttaaaacactccaagaatttttacatgttgaaaatccggctgaaaacttataatgcaactttcatgttg |
2615244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 12380664 - 12380575
Alignment:
| Q |
378 |
ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa |
468 |
Q |
| |
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|||||||||| |||||||||| ||| |||||| || | ||||||||| |||| |||||||||||||| || ||||||||||| ||||| |
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| T |
12380664 |
ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa |
12380575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 12384731 - 12384642
Alignment:
| Q |
378 |
ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa |
468 |
Q |
| |
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|||||||||| |||||||||| ||| |||||| || | ||||||||| |||| |||||||||||||| || ||||||||||| ||||| |
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| T |
12384731 |
ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa |
12384642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 468
Target Start/End: Complemental strand, 12363648 - 12363599
Alignment:
| Q |
419 |
ttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa |
468 |
Q |
| |
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||||||||| |||| |||||||||||||| || ||||||||||| ||||| |
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|
| T |
12363648 |
ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa |
12363599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 21932222 - 21932311
Alignment:
| Q |
247 |
aagagtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg |
336 |
Q |
| |
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||||||||| || |||||||||| ||| | | || |||||||||||||| |||| | | |||||||||||| |||| ||||||||||| |
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| T |
21932222 |
aagagtatacttcacttgaagttgaactatttcaagaactttcacatgtcgaaattcaagttgaaaacttattgtgcaacttccatgttg |
21932311 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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