View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_high_24 (Length: 297)
Name: NF11466_high_24
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 5591769 - 5592031
Alignment:
| Q |
1 |
atacaccaacaattgccatgaaaaaagccattggtgctctcactccaaactcaactcacaaagacagagnnnnnnnnttggttcacttgtttaagcttag |
100 |
Q |
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| T |
5591769 |
atacaccaacaattgccatgaaaaaagccattggtgctctcactccaaactcaactcacaaagacagagaaaaaaaaatggttcacttgtttaagcttag |
5591868 |
T |
|
| Q |
101 |
ttacctaaagagtgtacataagcacacatatatatagacccttcaattgaactatattttgaaaggaaaataaccatagagacnnnnnnngaaaattgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
5591869 |
ttacctaaagagtgtacataagcacacatatatatagacccttcaattgaactatattttgaaaggaaaataaccatagagacaaaaaaagaaaattcac |
5591968 |
T |
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| Q |
201 |
actattcaaggtaccctattaaattagcc-aaaaaaatgtaccctattaaaagccttggtgat |
262 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5591969 |
actattcaaggtaccctattaaattagccaaaaaaaatgtaccctattaaaagccttggtgat |
5592031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 976231 - 976483
Alignment:
| Q |
1 |
atacaccaacaattgccatgaaaaaagccattggtgctctcactccaaactcaactcacaaagacagagnnnnnnnnttggttcacttgtttaagcttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||| |
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| T |
976231 |
atacaccaacaattgccatgaaaaaagccattggtgctctcactccaaactcaactcaaaaagaaaaa----------tggttcacttgtttaagcttag |
976320 |
T |
|
| Q |
101 |
ttacctaaagagtgtacataagcacacatatatatagacccttcaattgaactatattttgaaaggaaaataaccatagagacnnnnnnngaaaattgac |
200 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||| | || |||||||||||||| ||||||| || |
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| T |
976321 |
ttacctaaagagtgtatataagcacac--atatatagacccttgaattgaaatatattttgaacgaaatataaccatagagacaaaataagaaaattcac |
976418 |
T |
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| Q |
201 |
actattcaaggtaccctattaaattagcc---aaaaaaatgtaccctattaaaagccttggtgat |
262 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
976419 |
actattcaaggtaccctattaaattagtcaaaaaaaaaatgtaccctattaaaagccttgctgat |
976483 |
T |
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