View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11466_high_27 (Length: 250)

Name: NF11466_high_27
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11466_high_27
NF11466_high_27
[»] chr4 (3 HSPs)
chr4 (11-250)||(1977513-1977752)
chr4 (11-222)||(1984434-1984645)
chr4 (15-236)||(1948668-1948889)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 1977513 - 1977752
Alignment:
Q  11 caaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1977513 caaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgttt 1977612  T
Q  111 gttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1977613 gttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcat 1977712  T
Q  211 ccatcaaaggtggcttgttaacaagatcagtgctagaatt 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1977713 ccatcaaaggtggcttgttaacaagatcagtgctagaatt 1977752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 1984434 - 1984645
Alignment:
Q  11 caaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgttt 110  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||| |||||||| |||||  ||||||||||||||||||||    
T  1984434 caaaggtcccgatccaaccgatgattcgtatgcaaccaagtttcgaagaaaaacttcggtgttgacatccaaactaattgtgggaaggtgaaaagtgttt 1984533  T
Q  111 gttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcat 210  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||| |    
T  1984534 gttttagcatcaaaactaatgcttgatatgcttccttttgcaggtaagaaattaacccctgcagtcacaagttgttcaacagaaggaatagcgatttcct 1984633  T
Q  211 ccatcaaaggtg 222  Q
    ||| ||| ||||    
T  1984634 ccaccaagggtg 1984645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 1948889 - 1948668
Alignment:
Q  15 ggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgtttgttt 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |  || || ||||||| ||||||  ||||||    
T  1948889 ggtcccgatccaaccgatgattcatacgcaaccaagtttcttagaaaaacttcggtattaacatccaaaccgataataggaaggtaaaaagttcttgttt 1948790  T
Q  115 tagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcatccat 214  Q
    | |||||||||||||| ||||||||||| ||||| |||||  | ||||| |||||||    ||||||||  | |||||||||||||| |||||| || ||    
T  1948789 ttgcatcaaaactaatacttgatatgctcccattagtaggagaaaaattcactcctgatttcacaagttctttaacagaaggaatagtgatttcttcaat 1948690  T
Q  215 caaaggtggcttgttaacaaga 236  Q
    ||||||||||||||||| ||||    
T  1948689 caaaggtggcttgttaataaga 1948668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University