View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11466_high_31 (Length: 239)

Name: NF11466_high_31
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11466_high_31
NF11466_high_31
[»] chr2 (1 HSPs)
chr2 (1-225)||(43849591-43849813)
[»] chr8 (1 HSPs)
chr8 (14-90)||(40054033-40054109)
[»] chr6 (1 HSPs)
chr6 (54-121)||(10796323-10796390)
[»] chr4 (3 HSPs)
chr4 (54-121)||(50077913-50077980)
chr4 (55-121)||(50112157-50112223)
chr4 (1-66)||(49109009-49109074)
[»] chr1 (1 HSPs)
chr1 (54-119)||(38175922-38175987)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 43849813 - 43849591
Alignment:
Q  1 caaactatgagaccacacacacaattttattttgagtaatcgtgatatttcacaagttgaaggctacgttcacaatcaggaaattcacttcataatttgt 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849813 caaactatgagaccacacaca--attttattttgagtaatcgtgatatttcacaagttgaaggctacgttcacaatcaggaaattcacttcataatttgt 43849716  T
Q  101 gattcttttacactacaaaatggtgaacacaagaagatgttggatcgcnnnnnnnncatggtgaaggatacataagnnnnnnnaagaaaattagtatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||       |||||||||||||||||    
T  43849715 gattcttttacactacaaaatggtgaacacaagaagatgttggattgcagaaaaaacatggtgaaggatacataagtttttttaagaaaattagtatcaa 43849616  T
Q  201 aagagtcctcaaagtattgatacat 225  Q
    |||||||||||||||||||||||||    
T  43849615 aagagtcctcaaagtattgatacat 43849591  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 40054109 - 40054033
Alignment:
Q  14 cacacacacaattttattttgagtaatcgtgatatttcacaagttgaaggctacgttcacaatcaggaaattcactt 90  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  40054109 cacacaaacaattttattttgagtaatcatgatatttcacaagttgaaggctatgttcacaatcagggaatttactt 40054033  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 10796323 - 10796390
Alignment:
Q  54 aagttgaaggctacgttcacaatcaggaaattcacttcataatttgtgattcttttacactacaaaat 121  Q
    ||||| ||||||||||||| ||||||| ||||||||||| || ||||||||||||||  |||||||||    
T  10796323 aagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaat 10796390  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 50077913 - 50077980
Alignment:
Q  54 aagttgaaggctacgttcacaatcaggaaattcacttcataatttgtgattcttttacactacaaaat 121  Q
    ||||| ||||||||||||| ||||||| ||||||||||| || ||||||||||||||  |||||||||    
T  50077913 aagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaat 50077980  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 50112223 - 50112157
Alignment:
Q  55 agttgaaggctacgttcacaatcaggaaattcacttcataatttgtgattcttttacactacaaaat 121  Q
    |||| |||||||||||||||||  || |||||||||||||| ||||||||||||||  |||||||||    
T  50112223 agtttaaggctacgttcacaatttgggaattcacttcataacttgtgattcttttatgctacaaaat 50112157  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49109009 - 49109074
Alignment:
Q  1 caaactatgagaccacacacacaattttattttgagtaatcgtgatatttcacaagttgaaggcta 66  Q
    ||||||||||| | || |||||||||||||||||||||||  | || ||||| || ||||||||||    
T  49109009 caaactatgagcctacgcacacaattttattttgagtaatgatcatgtttcagaatttgaaggcta 49109074  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 38175922 - 38175987
Alignment:
Q  54 aagttgaaggctacgttcacaatcaggaaattcacttcataatttgtgattcttttacactacaaa 119  Q
    ||||||| ||||| |||||||| |||| ||||||||| |||| || ||| |||| |||||||||||    
T  38175922 aagttgatggctatgttcacaaccagggaattcacttgataacttatgactcttatacactacaaa 38175987  T

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