View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11466_high_35 (Length: 208)
Name: NF11466_high_35
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_high_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 5295867 - 5296043
Alignment:
| Q |
17 |
aaggagatatatgcatgaacttggccaatccaaaatcctcagcatgtgattcaaaatcgaacttatgtaattagactttacttctaatcttctagtgcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
5295867 |
aaggagatatatgcatgaacttggccaatccaaaatcctcagcatgtgattcaaaatcaaacttatgtaattagatttcacttctaatcttctagtgcaa |
5295966 |
T |
|
| Q |
117 |
aacctcaaactaacttgagcattacatcaaggtcactgcaagaagagctaattgaataaaacataagaaaatatatt |
193 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5295967 |
aacctcaaactaacttgagcatcacatcaaggtcactgcaagaagagctaattgaataaaacataagaaaatatatt |
5296043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University