View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_high_9 (Length: 527)
Name: NF11466_high_9
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Original strand, 31078420 - 31078933
Alignment:
| Q |
18 |
agttatgcggtttttcaagctgggccgagggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagttta |
117 |
Q |
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| T |
31078420 |
agttatgcggtttttcaagctgggccgagggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagttta |
31078519 |
T |
|
| Q |
118 |
gggtggttcctgcgatggataaaggggttgagccggagtacattgcacaccttacctcattgatgaagggtggcttcttggtaagaattgagaagcgaag |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
31078520 |
gggtggttcctgcaatggataaaggggttgagccggagtacattgcacaccttacctcattgatgaaaggtggcttctcggtaagaattgagaagcgaag |
31078619 |
T |
|
| Q |
218 |
ccacaaagatcaataaaaattaataaggtcatgttaactagtatccctgagatattagttaagaaagttaaaagtgaaaaaatttcattgaaaaccacac |
317 |
Q |
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| T |
31078620 |
ccacaaagatcaataaaaattaataaggtcatgttaactagtattgctgatatattagttaagaaagttaaaagtgaaaaaatttcattaaaaaccacat |
31078719 |
T |
|
| Q |
318 |
attcttgattttaaaaaattacatatacaacttttccacattttacattacaatg-------------tttcttagcatttctcataaaagtaaatgttg |
404 |
Q |
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| T |
31078720 |
attcttaattttaaaaagttaaatatacaacttttccacattttacattacaatgtttctatattagttttcttagcatttctcataaaagtaaatgttg |
31078819 |
T |
|
| Q |
405 |
cataaatatgttccaaaagttccaacgtcaaaacatactcattatcttgtatagaatatgt--ttggtatcacaccaaatttgccaaaatcataatattc |
502 |
Q |
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| T |
31078820 |
cataaatatgttccaaaggttccaacgtcaaaacatactcattatcttgtatagaatatgtaattggtatcacaccaaatttgccaaaatcataatattc |
31078919 |
T |
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| Q |
503 |
atcgtgatgttcat |
516 |
Q |
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|||||||||||||| |
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| T |
31078920 |
atcgtgatgttcat |
31078933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 31127738 - 31127934
Alignment:
| Q |
18 |
agttatgcggtttttcaagctgggccgagggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagttta |
117 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
31127738 |
agttatgcggtttttcaggctgggccaagggtgtgtttaggaaaggaaatggcgttcttgcagatgaaaagggtggttgccgggatcatgaggcagttta |
31127837 |
T |
|
| Q |
118 |
gggtggttcctgcgatggataaaggggttgagccggagtacattgcacaccttacctcattgatgaagggtggcttcttggtaagaattgagaagcg |
214 |
Q |
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| T |
31127838 |
gggtggttcctgcaatggataaaggggttgagccggagttcgctgcacaccttacttcgataatgaaaggtggcttcctggtaaagattgagaagcg |
31127934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 31132456 - 31132579
Alignment:
| Q |
28 |
tttttcaagctgggccgagggtgtgtttaggaaaggaaatggcgttcttgcagatgaag---agggtggttgcagggatcatgaggcagtttagggtggt |
124 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||| | |||||| ||| |||||| || || || ||| |||||||| || | |
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| T |
31132456 |
tttttcaagctgggccgagggtgtgtttagggaaagaaatggcgttcttagaaatgaagatcaggttggttgttggcattataagggagtttaggttgct |
31132555 |
T |
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| Q |
125 |
tcctgcgatggataaaggggttga |
148 |
Q |
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||| ||||||||| |||||||||| |
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| T |
31132556 |
tccagcgatggatgaaggggttga |
31132579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 24123380 - 24123320
Alignment:
| Q |
275 |
gttaagaaagttaaaagtgaaaaaatttcattgaaaaccacacattcttgattttaaaaaa |
335 |
Q |
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||||| |||||||||||| |||| ||| ||||||||| ||| |||||||||||||||||| |
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| T |
24123380 |
gttaaaaaagttaaaagtagaaaattttaattgaaaacaacaaattcttgattttaaaaaa |
24123320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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