View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11466_low_12 (Length: 472)

Name: NF11466_low_12
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11466_low_12
NF11466_low_12
[»] chr4 (33 HSPs)
chr4 (15-453)||(7908034-7908472)
chr4 (16-425)||(7877454-7877880)
chr4 (37-425)||(7773773-7774173)
chr4 (16-412)||(7789836-7790220)
chr4 (21-411)||(7771152-7771530)
chr4 (121-411)||(7237763-7238050)
chr4 (182-410)||(7800386-7800611)
chr4 (182-410)||(7822718-7822943)
chr4 (182-309)||(7813327-7813454)
chr4 (42-162)||(50669055-50669181)
chr4 (263-425)||(7904766-7904926)
chr4 (193-296)||(37827109-37827212)
chr4 (23-162)||(48852666-48852811)
chr4 (22-96)||(49048508-49048582)
chr4 (204-404)||(7765376-7765573)
chr4 (204-404)||(7786198-7786395)
chr4 (22-89)||(45372004-45372071)
chr4 (112-237)||(48705390-48705518)
chr4 (109-162)||(48147745-48147798)
chr4 (22-88)||(49044122-49044188)
chr4 (20-85)||(48891495-48891560)
chr4 (118-162)||(37827022-37827066)
chr4 (111-162)||(48170592-48170643)
chr4 (104-162)||(50250804-50250862)
chr4 (24-89)||(7765703-7765768)
chr4 (121-162)||(7813477-7813518)
chr4 (121-162)||(7822966-7823007)
chr4 (109-162)||(48898704-48898757)
chr4 (23-95)||(7237677-7237749)
chr4 (21-89)||(7786525-7786593)
chr4 (263-299)||(45372254-45372290)
chr4 (118-162)||(48735419-48735463)
chr4 (122-162)||(48902932-48902972)
[»] chr5 (2 HSPs)
chr5 (22-87)||(179112-179177)
chr5 (109-162)||(29696206-29696259)
[»] chr3 (8 HSPs)
chr3 (182-299)||(47452011-47452128)
chr3 (109-162)||(11005981-11006034)
chr3 (109-162)||(11024556-11024609)
chr3 (106-162)||(11015541-11015597)
chr3 (40-89)||(11015457-11015506)
chr3 (40-95)||(11005894-11005949)
chr3 (40-95)||(11024469-11024524)
chr3 (352-424)||(11024808-11024880)
[»] chr8 (3 HSPs)
chr8 (112-162)||(12200307-12200357)
chr8 (112-162)||(12444735-12444785)
chr8 (22-95)||(4031836-4031909)
[»] chr7 (2 HSPs)
chr7 (109-162)||(48883801-48883854)
chr7 (183-248)||(48883703-48883768)
[»] chr6 (4 HSPs)
chr6 (180-245)||(21979752-21979817)
chr6 (193-287)||(21015672-21015766)
chr6 (121-162)||(21979678-21979719)
chr6 (23-80)||(21015897-21015954)
[»] chr1 (4 HSPs)
chr1 (109-162)||(24367147-24367200)
chr1 (120-162)||(24310171-24310213)
chr1 (120-161)||(24322463-24322504)
chr1 (109-162)||(24369480-24369533)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 453
Target Start/End: Complemental strand, 7908472 - 7908034
Alignment:
Q  15 ggacatcataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatacggctggattatagga 114  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  7908472 ggacaccataagggaagtaattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatgcggatggattatagga 7908373  T
Q  115 caatgaaaccaccaagtaatcatctcttgactggtcatatccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggggtatttgtttt 214  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  7908372 caatgaaaccaccaagtaatcatctcttgactggtcataaccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggtgtatatgtttt 7908273  T
Q  215 ttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatc 314  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7908272 ttaaatccagtagatggattccatatgtagatgtctggaggacggtacaaaagtataaaccctctacatgaacctctaatttcaaccggaaaatgagatc 7908173  T
Q  315 gggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaa 414  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908172 gggtaagcgaaaaagtaatgttgagtgaagcaggatcatcatcgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaa 7908073  T
Q  415 cataattctagaagcagcgtgttttgcagaggtaagttg 453  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7908072 cataattctagaagcagcgtgttttgcagaggtaagttg 7908034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 7877880 - 7877454
Alignment:
Q  16 gacatcataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaat-----acggctggattat 110  Q
    |||| ||||||||||| || ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||     | || ||||||||    
T  7877880 gacagcataagggaagggagtactctcagtttctttccatgtattatctctaaatgagaaaaacttcaaatgtgttgaaaattaactatggttggattat 7877781  T
Q  111 aggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaaccctg------------acattgtgctactgatttggaatcaacaggaga 198  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||            ||| | |||| || ||||||||  || ||||||    
T  7877780 aggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccatgtatatcaatgcgacaatatgctgctaatttggaacgaaaaggaga 7877681  T
Q  199 caggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttca 298  Q
    ||  ||||||||||||||||||||||| |||||||||||||||||||||  ||| |||| ||  ||||||||||||||||| ||||||||||||||||||    
T  7877680 cacaggtatttgttttttaaatccagtggatggattccatatgtagatgattggatgacagtacaaaagtataaaccctctgcatgaacctctaatttca 7877581  T
Q  299 accggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgag 398  Q
    ||||||||||||| ||    |||  ||||| ||||||| |||||||||||||||||| ||||||||||||||| |||| |||| |||||| |||||||||    
T  7877580 accggaaaataaggtccacgaagtgaaaaattaatgttcagtgaagcaggatcatcatcgttaagaaatgcttcaaaacctattgatcgaatttcatgag 7877481  T
Q  399 atagagttgatataaacataattctag 425  Q
    |||||| ||||||  ||||||||||||    
T  7877480 atagaggtgatatgcacataattctag 7877454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 37 - 425
Target Start/End: Original strand, 7773773 - 7774173
Alignment:
Q  37 accctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatacggctggattataggacaatgaaaccaccaagtaatca 136  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |  || ||||||||||  ||||||||||||||||    
T  7773773 accctcagtttctttccatgtattatctctaaatgagaaaaacttcaaacgtgttgaaactacggttatatgataggacaatacaaccaccaagtaatca 7773872  T
Q  137 tctcttgactggtcatatccaaaaccctg------------acattgtgctactgatttggaatcaacaggagacaggggtatttgttttttaaatccag 224  Q
    ||||||  ||||||||| |||||||| ||            |||  ||  | || ||||||||  || |||||||   ||||||||||||||||||||||    
T  7773873 tctcttacctggtcataaccaaaaccatgtatatgaatgctacaaagttttgctaatttggaacgaaaaggagacccaggtatttgttttttaaatccag 7773972  T
Q  225 tagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagcca 324  Q
    | |||||||||||||||||||||| ||| | ||| |  |||||||||||||||||||| ||||||||||||||| ||||||||||||||   | |||| |    
T  7773973 tggatggattccatatgtagatgtttgggtcacgatacaaaagtataaaccctctacacgaacctctaatttcagccggaaaataagattctggaagcga 7774072  T
Q  325 aaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattcta 424  Q
    |||| ||| ||| | |||||||| ||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  7774073 aaaattaaggttcactgaagcagtatcatcatcgttaagaaatgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacataattcta 7774172  T
Q  425 g 425  Q
    |    
T  7774173 g 7774173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 7790220 - 7789836
Alignment:
Q  16 gacatcataagggaagtga---ttaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatacggctggattatag 112  Q
    |||| ||||||||||||||   ||||| |||||||||||||| ||||||||||||| |||||||| || |||||||| |||||             || |    
T  7790220 gacaacataagggaagtgagtattaccatcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatgaaac------------atgg 7790133  T
Q  113 gacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggggtatttgtt 212  Q
    || |||  ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||  |||||||  |||||||||     
T  7790132 gaaaattcaaccaccaagtaatcatctcttgactggtcataaccaaaaccatgacaatgtgctattgatttggaatcaaagggagacaccggtatttgtg 7790033  T
Q  213 ttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataaga 312  Q
    ||||||||||||| ||||||||||||| || ||||| |||  | ||||  |||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  7790032 ttttaaatccagtggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttaaacaggaaaataaga 7789933  T
Q  313 tcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatata 412  Q
    |   | |||| ||||| ||| ||| | ||||||||||||||   ||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||    
T  7789932 ttctggaagcgaaaaattaaggttcactgaagcaggatcat---cgttaagaaatgcttcaaaatctatagatcaaatttcatgagattgagttgatata 7789836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 7771530 - 7771152
Alignment:
Q  21 cataagggaagtgatta---ccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatacggctggattataggacaa 117  Q
    |||||||||||||| ||   || |||||||||||||| ||||||||||||| |||||||| || |||||||| |||||             || ||| ||    
T  7771530 cataagggaagtgagtatgaccatcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatgaaa------------catgggaaaa 7771443  T
Q  118 tgaaaccaccaagtaatcatctcttgactggtcatatccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggggtatttgtttttta 217  Q
    |  ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||  |||||||  ||||||||| |||||    
T  7771442 ttcaaccaccaagtaatcatctcttgactggtcataaccaaaaccatgacaatgtgctattgatttggaatcaaagggagacaccggtatttgtgtttta 7771343  T
Q  218 aatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcggg 317  Q
    |||||| | ||||||||||||| || ||||| |||  | ||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||   |    
T  7771342 aatccaatggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttcaacaggaaaataagattctg 7771243  T
Q  318 taagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatat 411  Q
     |||| ||||| ||| ||| | ||||||||||||||   ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  7771242 gaagcgaaaaattaaggttcactgaagcaggatcat---cgttaagaaatgcttcaaaatctatagatcgaatttcatgagattgagttgatat 7771152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 121 - 411
Target Start/End: Original strand, 7237763 - 7238050
Alignment:
Q  121 aaccaccaagtaatcatctcttgactggtcatatccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggggtatttgttttttaaat 220  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||   ||||| | |||||||||||| |||||||| |||||||||||||||||||    
T  7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccatgacaacttgctaataatttggaatcaaaaggagacacgggtatttgttttttaaat 7237862  T
Q  221 ccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaa 320  Q
    ||||| ||||||||||||| |||||||| |||  |  |||  ||||||||||||||||||||||||||||| |||||||| ||||||||||||   | ||    
T  7237863 ccagtggatggattccatacgtagatgtttggaggttggtacaaaagtataaaccctctacatgaacctctgatttcaacaggaaaataagattccgaaa 7237962  T
Q  321 gccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatat 411  Q
     | ||||| ||  |||  ||||| |||||||||   ||||||||||||||| |  ||| || |||||| |||||||||||| || ||||||    
T  7237963 acaaaaaattacggttctgtgaaccaggatcat---cgttaagaaatgcttcaggatcgattgatcgaatttcatgagataaaggtgatat 7238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 182 - 410
Target Start/End: Complemental strand, 7800611 - 7800386
Alignment:
Q  182 ttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctac 281  Q
    |||||||||| || ||||| |||||||||||| ||||||||||||||||||||||| | ||| ||||||||   ||||| ||||| || |||||||| ||    
T  7800611 ttggaatcaaaagaagacacgggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccac 7800512  T
Q  282 atgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctat 381  Q
    |||| ||| |||||||||  ||||||||||||   | |||| | ||| ||| |||  |||||| | ||||||||   |||||  |||| | || ||||||    
T  7800511 atgaccctataatttcaaaaggaaaataagatttaggaagcaagaaattaaggttcggtgaaggaagatcatca---ttaagccatgcatcaacatctat 7800415  T
Q  382 agatcgagtttcatgagatagagttgata 410  Q
    ||||||| |||||||||||| || |||||    
T  7800414 agatcgaatttcatgagataaagatgata 7800386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 182 - 410
Target Start/End: Complemental strand, 7822943 - 7822718
Alignment:
Q  182 ttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctac 281  Q
    |||||||||| || |||||  ||||||||||| ||||||||||||||||||||||||| ||| ||||||||   ||||| ||||| || |||||||| ||    
T  7822943 ttggaatcaaaagaagacactggtatttgtttcttaaatccagtagatggattccataggtaaatgtctggaaaacggtataaaaataaaaaccctccac 7822844  T
Q  282 atgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctat 381  Q
    |||| ||| |||||||||  ||||||||||||   | |||| | ||| ||| |||  |||||| | ||||||||   |||||  |||| | || ||||||    
T  7822843 atgaccctataatttcaaaaggaaaataagatttaggaagcaagaaattaaggttcggtgaaggaagatcatca---ttaagccatgcatcaacatctat 7822747  T
Q  382 agatcgagtttcatgagatagagttgata 410  Q
    ||||||| |||||||||||| || |||||    
T  7822746 agatcgaatttcatgagataaagatgata 7822718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 7813454 - 7813327
Alignment:
Q  182 ttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctac 281  Q
    |||||||||| || ||||| |||||||||||| ||||||||||||||||||||||| | ||| ||||||||   ||||| ||||| || |||||||| ||    
T  7813454 ttggaatcaaaagaagacacgggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccac 7813355  T
Q  282 atgaacctctaatttcaaccggaaaata 309  Q
    |||| ||| |||||||||  ||||||||    
T  7813354 atgaccctataatttcaaaaggaaaata 7813327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 50669181 - 50669055
Alignment:
Q  42 caatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa----atac--ggctggattataggacaatgaaaccaccaagtaatc 135  Q
    |||||| |||||||||||||||||| |||||||||||||  |||| || |||||    || |  || ||||| ||||||||||||||| |||||||||||    
T  50669181 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatc 50669082  T
Q  136 atctcttgactggtcatatccaaaacc 162  Q
    |||||||||| ||||||| ||||||||    
T  50669081 atctcttgaccggtcataaccaaaacc 50669055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 425
Target Start/End: Complemental strand, 7904926 - 7904766
Alignment:
Q  263 aaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagc-caaaaagtaatgttgagtgaagcaggatcatcaccgtta 361  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||  || ||||  ||||| ||| |||   |||| || ||| ||||   |||    
T  7904926 aaaagtataaaccctctacacgaacctctaatttcaactggaaaataagattcgggaagcgaaaaaattaaggttccatgaaccacgatgatca---tta 7904830  T
Q  362 agaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctag 425  Q
    |||||||||| ||||| || |||| || ||||||||||||||  ||||||  ||||||||||||    
T  7904829 agaaatgcttcaaaatataaagattgaatttcatgagatagatatgatatgcacataattctag 7904766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 37827109 - 37827212
Alignment:
Q  193 aggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctcta 292  Q
    |||||||| |||||||||||| | ||||||||| |||||||||||||||||||||| |     |||||| |||| || ||||||||||| ||||||| ||    
T  37827109 aggagacaagggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaaccttta 37827208  T
Q  293 attt 296  Q
    ||||    
T  37827209 attt 37827212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 48852811 - 48852666
Alignment:
Q  23 taagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa------atacggctggattataggaca 116  Q
    |||||||||||| ||||||||||||||||||||| |||| |||| | |||||||||||  ||||||| |||||       || || || || ||||||||    
T  48852811 taagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatcataggaca 48852712  T
Q  117 atgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
     | |||| ||||||||||||||  ||||| ||||||| ||||||||    
T  48852711 ttaaaactaccaagtaatcatcggttgacgggtcatacccaaaacc 48852666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 49048508 - 49048582
Alignment:
Q  22 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaa 96  Q
    |||||||| |||| |||||||||||||||||||| |||||||||| |  |||||||||| |||||||| ||||||    
T  49048508 ataagggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgatgaaaa 49048582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 404
Target Start/End: Complemental strand, 7765573 - 7765376
Alignment:
Q  204 gtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccgg 303  Q
    |||||||| ||||  |||| || ||||||||||| ||||| |||| ||| |||||||  | || |||||| ||||||||||| ||| |||||||||  ||    
T  7765573 gtatttgtcttttcgatccggtggatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttaatttcaaaggg 7765474  T
Q  304 aaaataaga-tcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatag 402  Q
    ||||||||| || || |||  || |  ||| |||| ||||||||||| |||   ||||||||||||| | |||||| || |||||| ||||| |||||||    
T  7765473 aaaataagagtctgg-aagggaacagttaaagttgggtgaagcaggagcat---cgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatag 7765378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 404
Target Start/End: Complemental strand, 7786395 - 7786198
Alignment:
Q  204 gtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccgg 303  Q
    |||||||| ||||  |||| || ||||||||||||||||| |||| ||| ||||| |  | || |||||| ||||||||||| ||| |||||||||  ||    
T  7786395 gtatttgtcttttcgatccggtggatggattccatatgtaaatgtttggatgacgatacataaatataaaacctctacatgaccctttaatttcaaaggg 7786296  T
Q  304 aaaataaga-tcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatag 402  Q
    ||||||||| || || |||  || |  ||| |||| ||||||||||| |||   ||||||||||||| | |||||| || |||||| ||||| |||||||    
T  7786295 aaaataagagtctgg-aagggaacagttaaagttgggtgaagcaggagcat---cgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatag 7786200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 45372004 - 45372071
Alignment:
Q  22 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 89  Q
    ||||||||||||| ||||||||| |||| |||| ||||||||||| | ||||||||||| ||||||||    
T  45372004 ataagggaagtgagtaccctcaagttctctccaagtattatctctcaatgagaaaaactccaaatgtg 45372071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 48705390 - 48705518
Alignment:
Q  112 ggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaaccctg---acattgtgctactgatttggaatcaacaggagacaggggtatt 208  Q
    ||||| |||||| ||||||||||||||| ||||||| |||||||||||||| ||   | ||| |||  || | | |||| ||| ||| ||||  ||||||    
T  48705390 ggacattgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccatggaaatattctgcatctaaatcggaaccaaaaggtgacaaaggtatt 48705489  T
Q  209 tgttttttaaatccagtagatggattcca 237  Q
    ||||| | |||||||||||||||||||||    
T  48705490 tgtttgtgaaatccagtagatggattcca 48705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 48147745 - 48147798
Alignment:
Q  109 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||| |||||||||||||||||||||||| || |||||||||| ||||||||    
T  48147745 ataggagaatgaaaccaccaagtaatcatctgttaactggtcatacccaaaacc 48147798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 49044122 - 49044188
Alignment:
Q  22 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgt 88  Q
    ||||||||||| | || |||||||||| |||||| |||||||||| | ||||||||||| |||||||    
T  49044122 ataagggaagttagtaacctcaatttcattccatctattatctctcaatgagaaaaactccaaatgt 49044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 48891560 - 48891495
Alignment:
Q  20 tcataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaa 85  Q
    ||||||||||| | | |||||||||||||||||||  |||||||||| | ||||||||||| ||||    
T  48891560 tcataagggaaataagtaccctcaatttctttccacatattatctctcaatgagaaaaactccaaa 48891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 37827022 - 37827066
Alignment:
Q  118 tgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||    
T  37827022 tgaaacaaccaagtaatcatctctagactggtcataaccaaaacc 37827066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 48170592 - 48170643
Alignment:
Q  111 aggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||| ||||||||| ||||||||||||||| |||| ||||| ||||||||    
T  48170592 aggacactgaaaccactaagtaatcatctcttaactgatcatacccaaaacc 48170643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 50250804 - 50250862
Alignment:
Q  104 ggattataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||| |||||| | |||||||||||| ||||||||| |||| |||||||| ||||||||    
T  50250804 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaacc 50250862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 7765768 - 7765703
Alignment:
Q  24 aagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 89  Q
    |||| |||||| ||||||| ||||||||||| ||||| ||| |||  |||||||||| ||||||||    
T  7765768 aaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtg 7765703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 7813518 - 7813477
Alignment:
Q  121 aaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    ||||| || |||||||||||||||||||||||| ||||||||    
T  7813518 aaccagcacgtaatcatctcttgactggtcataaccaaaacc 7813477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 7823007 - 7822966
Alignment:
Q  121 aaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    ||||| || |||||||||||||||||||||||| ||||||||    
T  7823007 aaccagcacgtaatcatctcttgactggtcataaccaaaacc 7822966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 48898757 - 48898704
Alignment:
Q  109 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||||||| ||||||| |||||||||||| || |||| ||||| ||||||||    
T  48898757 ataggacaataaaaccactaagtaatcatctgttaactgatcatacccaaaacc 48898704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 7237677 - 7237749
Alignment:
Q  23 taagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa 95  Q
    |||||||| ||| |||  ||||||||||||||  ||||||||||||  ||||||| || |||||||| |||||    
T  7237677 taagggaaatgaatacaatcaatttctttccacatattatctctaaaagagaaaacctccaaatgtgatgaaa 7237749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 7786593 - 7786525
Alignment:
Q  21 cataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 89  Q
    ||||||| |||||| ||||||| ||||||||||| ||||| ||| |||  ||||||| || ||||||||    
T  7786593 cataaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaacctccaaatgtg 7786525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 45372254 - 45372290
Alignment:
Q  263 aaaagtataaaccctctacatgaacctctaatttcaa 299  Q
    |||| |||||||||||||||||||||| |||||||||    
T  45372254 aaaaatataaaccctctacatgaacctttaatttcaa 45372290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 48735419 - 48735463
Alignment:
Q  118 tgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||||||||||||||||||| || | |||||||| ||||||||    
T  48735419 tgaaaccaccaagtaatcatctgttaaatggtcatacccaaaacc 48735463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 48902972 - 48902932
Alignment:
Q  122 accaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||| |||||||||||||||||| |||||||| ||||||||    
T  48902972 accatcaagtaatcatctcttgagtggtcatacccaaaacc 48902932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 179177 - 179112
Alignment:
Q  22 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatg 87  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||| || ||||||    
T  179177 ataagggcagtgaataccctcaatttctttccatgtattatctctcaatgagaaaatctccaaatg 179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 29696259 - 29696206
Alignment:
Q  109 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||||| ||||| |||||||||||||||| |||||| |||||| ||||||||    
T  29696259 ataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaacc 29696206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 47452011 - 47452128
Alignment:
Q  182 ttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctac 281  Q
    |||||| ||| ||||| ||  ||||||||||| | || |||||| |||||||||||||||||||||| ||    ||    ||||||||||||||||||||    
T  47452011 ttggaaccaaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctac 47452110  T
Q  282 atgaacctctaatttcaa 299  Q
    |||||||| |||||||||    
T  47452111 atgaacctttaatttcaa 47452128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 11005981 - 11006034
Alignment:
Q  109 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||    
T  11005981 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaacc 11006034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 11024556 - 11024609
Alignment:
Q  109 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||    
T  11024556 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaacc 11024609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 11015541 - 11015597
Alignment:
Q  106 attataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    ||||||||||| ||| ||||||||||||||||||||| | |||||||| ||||||||    
T  11015541 attataggacactgataccaccaagtaatcatctcttaaatggtcatacccaaaacc 11015597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 11015457 - 11015506
Alignment:
Q  40 ctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 89  Q
    ||||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  11015457 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtg 11015506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 11005894 - 11005949
Alignment:
Q  40 ctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa 95  Q
    |||||||||||||||||||||  |||| | |||||||||||||||| ||| |||||    
T  11005894 ctcaatttctttccatgtattcgctctcaatgagaaaaacttcaaacgtgatgaaa 11005949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 11024469 - 11024524
Alignment:
Q  40 ctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa 95  Q
    ||||||||| |||||||||||| |||| |  ||||||||||||||||||| |||||    
T  11024469 ctcaatttcgttccatgtattagctctcaaagagaaaaacttcaaatgtgatgaaa 11024524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 11024808 - 11024880
Alignment:
Q  352 atcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattcta 424  Q
    |||| |||||||  |||||| ||||||||| |||||||||||  ||| ||||||||| || |||| |||||||    
T  11024808 atcatcgttaagcgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattcta 11024880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 12200357 - 12200307
Alignment:
Q  112 ggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||    
T  12200357 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaacc 12200307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 12444785 - 12444735
Alignment:
Q  112 ggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||    
T  12444785 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaacc 12444735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 4031836 - 4031909
Alignment:
Q  22 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa 95  Q
    ||||||||| ||  ||||||| |||||||||||||| ||  |||| | ||||||||||| |||||||| |||||    
T  4031836 ataagggaaatggataccctcgatttctttccatgtgttggctctcagtgagaaaaactccaaatgtgatgaaa 4031909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 48883854 - 48883801
Alignment:
Q  109 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||    
T  48883854 ataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaacc 48883801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 48883768 - 48883703
Alignment:
Q  183 tggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgt 248  Q
    |||||| || ||||||||  ||||||||||| | |||||||||  |||||||||||||| ||||||    
T  48883768 tggaataaaaaggagacaaaggtatttgtttgtgaaatccagtgtatggattccatatgcagatgt 48883703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 21979752 - 21979817
Alignment:
Q  180 atttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtaga 245  Q
    |||||||||||| ||||||||  ||||||||||||| || ||||||||| || |||||||||||||    
T  21979752 atttggaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtaga 21979817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 21015766 - 21015672
Alignment:
Q  193 aggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaac 287  Q
    ||||||||  ||||||||||| | || || ||| ||||||||||||| |||||||| ||  | | |||| |||| ||||||||||||||||||||    
T  21015766 aggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 21979678 - 21979719
Alignment:
Q  121 aaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaacc 21979719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 21015954 - 21015897
Alignment:
Q  23 taagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaact 80  Q
    ||||||||| || |||||||||||||||||||  |||||||||| |  ||||||||||    
T  21015954 taagggaagggagtaccctcaatttctttccacctattatctctcaacgagaaaaact 21015897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 24367200 - 24367147
Alignment:
Q  109 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||| || ||||||||||||||||||||| |||||| |||||| ||||||||    
T  24367200 ataggataacgaaaccaccaagtaatcatctgttgacttgtcatacccaaaacc 24367147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 24310213 - 24310171
Alignment:
Q  120 aaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||| |||||||||||||||||||||| |||||| ||||||||    
T  24310213 aaactaccaagtaatcatctcttgactcgtcataaccaaaacc 24310171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 24322504 - 24322463
Alignment:
Q  120 aaaccaccaagtaatcatctcttgactggtcatatccaaaac 161  Q
    |||| ||||||||||| |||||||||| ||||||||||||||    
T  24322504 aaactaccaagtaatcctctcttgactcgtcatatccaaaac 24322463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 24369533 - 24369480
Alignment:
Q  109 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 162  Q
    |||||| | ||||||||||| |||||||||| |||||| |||||| ||||||||    
T  24369533 ataggatactgaaaccaccaggtaatcatctgttgactcgtcatagccaaaacc 24369480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University